miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32094 3' -49.4 NC_007016.1 + 92238 0.77 0.704057
Target:  5'- gGUgGUCGCUCGCGUACAGAAaccgauCGGg -3'
miRNA:   3'- gUAgUAGUGGGUGCAUGUCUUgu----GCC- -5'
32094 3' -49.4 NC_007016.1 + 9091 0.66 0.99662
Target:  5'- aCGUCcgUGCCuUGCGUACAGuGCcuGCGGg -3'
miRNA:   3'- -GUAGuaGUGG-GUGCAUGUCuUG--UGCC- -5'
32094 3' -49.4 NC_007016.1 + 13699 0.67 0.995115
Target:  5'- --aCGUCACCCACGUccuccaGCAGGcccucaagaacaccGC-CGGc -3'
miRNA:   3'- guaGUAGUGGGUGCA------UGUCU--------------UGuGCC- -5'
32094 3' -49.4 NC_007016.1 + 115879 0.67 0.993778
Target:  5'- -uUCGUgACCCGCGggugacccggcgaugGCAccgcGGGCGCGGg -3'
miRNA:   3'- guAGUAgUGGGUGCa--------------UGU----CUUGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 95656 0.67 0.993685
Target:  5'- uCGUCAauuUCugCCGCGcggGCGGAuaACGGu -3'
miRNA:   3'- -GUAGU---AGugGGUGCa--UGUCUugUGCC- -5'
32094 3' -49.4 NC_007016.1 + 44203 0.68 0.992049
Target:  5'- cCcgCGUCgACCCGCGUAUgaaauguugaauguuAGAuugcguccGCACGGg -3'
miRNA:   3'- -GuaGUAG-UGGGUGCAUG---------------UCU--------UGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 38903 0.68 0.988985
Target:  5'- --cCGUCccaacgcgcaGCCCACGUugacgaugauCGGGACGCGGu -3'
miRNA:   3'- guaGUAG----------UGGGUGCAu---------GUCUUGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 14082 0.68 0.985788
Target:  5'- gCAUCGUgGCCUuCGaUAUAGAguGCAUGGg -3'
miRNA:   3'- -GUAGUAgUGGGuGC-AUGUCU--UGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 78904 0.69 0.983944
Target:  5'- uCGUCGUCuGCCCAaaacaGUcCAGAAUACGu -3'
miRNA:   3'- -GUAGUAG-UGGGUg----CAuGUCUUGUGCc -5'
32094 3' -49.4 NC_007016.1 + 62111 0.69 0.98375
Target:  5'- uCGUCGUCACCguugcagucccugCGCGaugcgugccucuUACAGGcgGCACGGa -3'
miRNA:   3'- -GUAGUAGUGG-------------GUGC------------AUGUCU--UGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 72860 0.69 0.977323
Target:  5'- aCAUUAUUaauuuccgcaGCCCACGUgACAGAGuCAuCGGa -3'
miRNA:   3'- -GUAGUAG----------UGGGUGCA-UGUCUU-GU-GCC- -5'
32094 3' -49.4 NC_007016.1 + 123412 0.75 0.784898
Target:  5'- cCAUCAgCGCCCugGggaGCGGGGCGcCGGg -3'
miRNA:   3'- -GUAGUaGUGGGugCa--UGUCUUGU-GCC- -5'
32094 3' -49.4 NC_007016.1 + 16560 0.74 0.830894
Target:  5'- -cUCAUCGcCCCACGggauuccgGCGGcGACGCGGa -3'
miRNA:   3'- guAGUAGU-GGGUGCa-------UGUC-UUGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 92369 0.71 0.938065
Target:  5'- uGUUGUCACCCACGaccugaucuaagcacUGCAGGGCAUu- -3'
miRNA:   3'- gUAGUAGUGGGUGC---------------AUGUCUUGUGcc -5'
32094 3' -49.4 NC_007016.1 + 41191 0.71 0.950224
Target:  5'- cCAUCAcgccCGCCCACGuUGCGGcgauuaccucgGACAUGGg -3'
miRNA:   3'- -GUAGUa---GUGGGUGC-AUGUC-----------UUGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 84980 0.7 0.958413
Target:  5'- aCAUCAUCGCaCACGUAgcgaaguuuCAGGGCAaUGGg -3'
miRNA:   3'- -GUAGUAGUGgGUGCAU---------GUCUUGU-GCC- -5'
32094 3' -49.4 NC_007016.1 + 62255 0.7 0.968882
Target:  5'- gCGUCugauUCGuCCCAUGUcucaACAGAGcCACGGu -3'
miRNA:   3'- -GUAGu---AGU-GGGUGCA----UGUCUU-GUGCC- -5'
32094 3' -49.4 NC_007016.1 + 114474 0.69 0.974722
Target:  5'- aUAUCG-CGCUaCACGaaUACGGGACGCGGc -3'
miRNA:   3'- -GUAGUaGUGG-GUGC--AUGUCUUGUGCC- -5'
32094 3' -49.4 NC_007016.1 + 8502 0.66 0.997596
Target:  5'- cUAUCAgggCACCCGCGUcCucGAAugucCACGGc -3'
miRNA:   3'- -GUAGUa--GUGGGUGCAuGu-CUU----GUGCC- -5'
32094 3' -49.4 NC_007016.1 + 17566 0.75 0.784898
Target:  5'- uCGUCGgcggagcuuacUCGCaCCACGggGCAGGGCGCGGc -3'
miRNA:   3'- -GUAGU-----------AGUG-GGUGCa-UGUCUUGUGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.