miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32095 5' -60.5 NC_007016.1 + 48493 0.66 0.727376
Target:  5'- cCCCGCacgagauaaggcagGGG-CACGAgG-GGGAGGUc -3'
miRNA:   3'- aGGGCGa-------------CCCaGUGCUgUgCCCUCCG- -5'
32095 5' -60.5 NC_007016.1 + 5812 0.66 0.713907
Target:  5'- aCCUGCUGGGUC-UGAaacacuGCGGGAa-- -3'
miRNA:   3'- aGGGCGACCCAGuGCUg-----UGCCCUccg -5'
32095 5' -60.5 NC_007016.1 + 130130 0.66 0.713907
Target:  5'- gUCCCGCUccgccGGGcccCGcCGACuccCGGGAGcGCc -3'
miRNA:   3'- -AGGGCGA-----CCCa--GU-GCUGu--GCCCUC-CG- -5'
32095 5' -60.5 NC_007016.1 + 123420 0.66 0.713907
Target:  5'- -gCC-CUGGGgagCGgGGCGCcGGGGGCg -3'
miRNA:   3'- agGGcGACCCa--GUgCUGUGcCCUCCG- -5'
32095 5' -60.5 NC_007016.1 + 7159 0.66 0.713907
Target:  5'- -aCCGCgGGGUC-Cu-CACGGGAuGCg -3'
miRNA:   3'- agGGCGaCCCAGuGcuGUGCCCUcCG- -5'
32095 5' -60.5 NC_007016.1 + 124689 0.66 0.712939
Target:  5'- gCCCGgaaacCUGGGUCACccagGGCAgGGGcagacucAGGUg -3'
miRNA:   3'- aGGGC-----GACCCAGUG----CUGUgCCC-------UCCG- -5'
32095 5' -60.5 NC_007016.1 + 122753 0.66 0.704206
Target:  5'- aCCCacgGCUGGGUCuaccaGCGAgGCcaGGuGGCg -3'
miRNA:   3'- aGGG---CGACCCAG-----UGCUgUGc-CCuCCG- -5'
32095 5' -60.5 NC_007016.1 + 27393 0.66 0.673804
Target:  5'- aCCCGCguuucagCACGucucucugugcgcACugGGGAGGCg -3'
miRNA:   3'- aGGGCGaccca--GUGC-------------UGugCCCUCCG- -5'
32095 5' -60.5 NC_007016.1 + 121955 0.67 0.664909
Target:  5'- uUCCCGCcgcccgUGGGUCAa-GCACuGGGccuccGGCu -3'
miRNA:   3'- -AGGGCG------ACCCAGUgcUGUG-CCCu----CCG- -5'
32095 5' -60.5 NC_007016.1 + 130075 0.67 0.645079
Target:  5'- -gCCGCUuucGGuUCGCGGggccggggguccCGCGGGGGGCc -3'
miRNA:   3'- agGGCGA---CCcAGUGCU------------GUGCCCUCCG- -5'
32095 5' -60.5 NC_007016.1 + 44344 0.67 0.635146
Target:  5'- gUCgaCGC-GGGUCGCGACACGaaucGGCa -3'
miRNA:   3'- -AGg-GCGaCCCAGUGCUGUGCccu-CCG- -5'
32095 5' -60.5 NC_007016.1 + 57060 0.67 0.635146
Target:  5'- gUCCaCGCUuGGUUACGACAaacuguuGAGGCg -3'
miRNA:   3'- -AGG-GCGAcCCAGUGCUGUgcc----CUCCG- -5'
32095 5' -60.5 NC_007016.1 + 114134 0.68 0.605362
Target:  5'- cUCCgGgUgGGGUgGCGGCucCGGGuGGCu -3'
miRNA:   3'- -AGGgCgA-CCCAgUGCUGu-GCCCuCCG- -5'
32095 5' -60.5 NC_007016.1 + 114162 0.68 0.605362
Target:  5'- cUCCgGgUgGGGUgGCGGCucCGGGuGGCu -3'
miRNA:   3'- -AGGgCgA-CCCAgUGCUGu-GCCCuCCG- -5'
32095 5' -60.5 NC_007016.1 + 114190 0.68 0.605362
Target:  5'- cUCCgGgUgGGGUgGCGGCucCGGGuGGCu -3'
miRNA:   3'- -AGGgCgA-CCCAgUGCUGu-GCCCuCCG- -5'
32095 5' -60.5 NC_007016.1 + 27560 0.68 0.575745
Target:  5'- cCCCGauuuuuuggccCUGGcGUCACGGCucGCGGGGGacucGCg -3'
miRNA:   3'- aGGGC-----------GACC-CAGUGCUG--UGCCCUC----CG- -5'
32095 5' -60.5 NC_007016.1 + 16636 0.68 0.556179
Target:  5'- gCCCGCUaaccguguGGGUgaaCGCGA-ACGGGcGGCa -3'
miRNA:   3'- aGGGCGA--------CCCA---GUGCUgUGCCCuCCG- -5'
32095 5' -60.5 NC_007016.1 + 26125 0.69 0.532964
Target:  5'- gUCCGCagucugaaucgagGGGcgggCACGcacccGCGCGGGGGGCa -3'
miRNA:   3'- aGGGCGa------------CCCa---GUGC-----UGUGCCCUCCG- -5'
32095 5' -60.5 NC_007016.1 + 70726 0.7 0.45313
Target:  5'- gCCCGCacGGG-CGCuGCGCGGGAccucgGGCg -3'
miRNA:   3'- aGGGCGa-CCCaGUGcUGUGCCCU-----CCG- -5'
32095 5' -60.5 NC_007016.1 + 22332 0.7 0.452239
Target:  5'- -aCCGCcGGGUCA--GCACGGGcagcgagGGGCa -3'
miRNA:   3'- agGGCGaCCCAGUgcUGUGCCC-------UCCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.