miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32096 5' -61.5 NC_007016.1 + 124669 0.66 0.614724
Target:  5'- -cAGGGCAGGGGCAgacucAGGuGGGucGGa -3'
miRNA:   3'- uaUUCCGUCCCCGUgc---UCC-CCCu-CCa -5'
32096 5' -61.5 NC_007016.1 + 14464 0.66 0.594537
Target:  5'- ---uGGCGGGGGa--GGGGGGuucauGAGGUc -3'
miRNA:   3'- uauuCCGUCCCCgugCUCCCC-----CUCCA- -5'
32096 5' -61.5 NC_007016.1 + 119163 0.66 0.564475
Target:  5'- --cGGGCGGGGauuGCG-GAGGGGGcgAGGa -3'
miRNA:   3'- uauUCCGUCCC---CGUgCUCCCCC--UCCa -5'
32096 5' -61.5 NC_007016.1 + 118854 0.66 0.564475
Target:  5'- gGUAucGCGGcGGGCGCGGGGGGcGcgccGGUu -3'
miRNA:   3'- -UAUucCGUC-CCCGUGCUCCCC-Cu---CCA- -5'
32096 5' -61.5 NC_007016.1 + 26142 0.67 0.544654
Target:  5'- -aGGGGCGGGcacgcacccGCGCGGGGGGcaGAGGc -3'
miRNA:   3'- uaUUCCGUCCc--------CGUGCUCCCC--CUCCa -5'
32096 5' -61.5 NC_007016.1 + 119067 0.68 0.490517
Target:  5'- -cGAGGUuccugaaagacaacGGGaGCAaGAGGGGGAGGa -3'
miRNA:   3'- uaUUCCGu-------------CCC-CGUgCUCCCCCUCCa -5'
32096 5' -61.5 NC_007016.1 + 13414 0.68 0.465314
Target:  5'- -gGGGGCGGGcGCAucggugcauuugugUGAGGGGGGGcGUg -3'
miRNA:   3'- uaUUCCGUCCcCGU--------------GCUCCCCCUC-CA- -5'
32096 5' -61.5 NC_007016.1 + 130090 0.69 0.423124
Target:  5'- -cGGGGcCGGGGGUcccGCGGGGGGccGGGGc -3'
miRNA:   3'- uaUUCC-GUCCCCG---UGCUCCCC--CUCCa -5'
32096 5' -61.5 NC_007016.1 + 115630 0.69 0.389083
Target:  5'- -gAGGGCGGcGGGguCGc-GGGGAGGUc -3'
miRNA:   3'- uaUUCCGUC-CCCguGCucCCCCUCCA- -5'
32096 5' -61.5 NC_007016.1 + 130153 0.7 0.349136
Target:  5'- --cGGGCGGaGGGC-CGGgagccGGGGGAGGc -3'
miRNA:   3'- uauUCCGUC-CCCGuGCU-----CCCCCUCCa -5'
32096 5' -61.5 NC_007016.1 + 130463 0.71 0.315042
Target:  5'- ---cGGCGcggagaccaccuuucGGGGCgACGuGGGGGAGGg -3'
miRNA:   3'- uauuCCGU---------------CCCCG-UGCuCCCCCUCCa -5'
32096 5' -61.5 NC_007016.1 + 119350 0.72 0.259413
Target:  5'- -gGGGGC-GGGGUGCGAuGGGGGugauGGUg -3'
miRNA:   3'- uaUUCCGuCCCCGUGCU-CCCCCu---CCA- -5'
32096 5' -61.5 NC_007016.1 + 48483 1.04 0.001328
Target:  5'- gAUAAGGCAGGGGCACGAGGGGGAGGUc -3'
miRNA:   3'- -UAUUCCGUCCCCGUGCUCCCCCUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.