miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32097 5' -60.3 NC_007016.1 + 99901 0.66 0.722025
Target:  5'- cGUCCGAGaaGCGGCGGcccUCCAGg-CGa- -3'
miRNA:   3'- -CAGGCUCg-UGCCGCC---AGGUCagGCag -5'
32097 5' -60.3 NC_007016.1 + 35517 0.66 0.672825
Target:  5'- ---gGGGUACGGcCGGUCCcggaAGUCCGa- -3'
miRNA:   3'- caggCUCGUGCC-GCCAGG----UCAGGCag -5'
32097 5' -60.3 NC_007016.1 + 28268 0.67 0.632839
Target:  5'- cGUCCGGGUACGGUGGcuuugUCgAGgCUGUg -3'
miRNA:   3'- -CAGGCUCGUGCCGCC-----AGgUCaGGCAg -5'
32097 5' -60.3 NC_007016.1 + 130335 0.67 0.622822
Target:  5'- cGUCgGGGCGCGGCGccgCCGGgcucggCCGg- -3'
miRNA:   3'- -CAGgCUCGUGCCGCca-GGUCa-----GGCag -5'
32097 5' -60.3 NC_007016.1 + 9283 0.69 0.505022
Target:  5'- --aCGcAGCACGGC-GUCCGGUCC-UCg -3'
miRNA:   3'- cagGC-UCGUGCCGcCAGGUCAGGcAG- -5'
32097 5' -60.3 NC_007016.1 + 90296 0.7 0.475105
Target:  5'- uUCCGAGagauugcccggaACGGCauuauUCCGGUCCGUCg -3'
miRNA:   3'- cAGGCUCg-----------UGCCGcc---AGGUCAGGCAG- -5'
32097 5' -60.3 NC_007016.1 + 130267 0.7 0.44967
Target:  5'- -cCCG-GCAUGGCGGUCC--UCCGcCg -3'
miRNA:   3'- caGGCuCGUGCCGCCAGGucAGGCaG- -5'
32097 5' -60.3 NC_007016.1 + 119682 0.71 0.417248
Target:  5'- aGUCCGGGCACgggucaucacaggGGUcgccuucggggucggGGUCUgAGUCCGUCa -3'
miRNA:   3'- -CAGGCUCGUG-------------CCG---------------CCAGG-UCAGGCAG- -5'
32097 5' -60.3 NC_007016.1 + 11128 0.73 0.313345
Target:  5'- -aCCGGuCACGGCGGUCuCGGUCCa-- -3'
miRNA:   3'- caGGCUcGUGCCGCCAG-GUCAGGcag -5'
32097 5' -60.3 NC_007016.1 + 120656 0.73 0.313345
Target:  5'- --gCGGGCACGGUGGUUCAGcccCCGUUc -3'
miRNA:   3'- cagGCUCGUGCCGCCAGGUCa--GGCAG- -5'
32097 5' -60.3 NC_007016.1 + 51235 1.09 0.00094
Target:  5'- cGUCCGAGCACGGCGGUCCAGUCCGUCg -3'
miRNA:   3'- -CAGGCUCGUGCCGCCAGGUCAGGCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.