miRNA display CGI


Results 1 - 6 of 6 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
321 3' -59.6 AC_000010.1 + 9348 0.66 0.405872
Target:  5'- gCCc-GUG-CGCCgCCGGcgUCGCCGCGuGCc -3'
miRNA:   3'- -GGacCAUaGCGG-GGCU--AGCGGCGC-CG- -5'
321 3' -59.6 AC_000010.1 + 10674 0.68 0.316559
Target:  5'- gCCUGGgaguggcUCGCgCCCGuagucuggagaaucaAUCGCCaggguugcguuGCGGCa -3'
miRNA:   3'- -GGACCau-----AGCG-GGGC---------------UAGCGG-----------CGCCG- -5'
321 3' -59.6 AC_000010.1 + 17446 0.68 0.298511
Target:  5'- gCUGGgggGUggcuuucugccUGCUCUGAUCcccaucauaGCCGCGGCg -3'
miRNA:   3'- gGACCa--UA-----------GCGGGGCUAG---------CGGCGCCG- -5'
321 3' -59.6 AC_000010.1 + 27732 0.7 0.219596
Target:  5'- cCCUGGUcgCG-CUCGAUUagcacggGCCGCuGGCa -3'
miRNA:   3'- -GGACCAuaGCgGGGCUAG-------CGGCG-CCG- -5'
321 3' -59.6 AC_000010.1 + 8535 0.72 0.167121
Target:  5'- uUCUGGUAcugCGCCCUGAgaagacuugcgugCGCgacaaCGCGGCg -3'
miRNA:   3'- -GGACCAUa--GCGGGGCUa------------GCG-----GCGCCG- -5'
321 3' -59.6 AC_000010.1 + 17547 1.12 0.000149
Target:  5'- gCCUGGUAUCGCCCCGAUCGCCGCGGCu -3'
miRNA:   3'- -GGACCAUAGCGGGGCUAGCGGCGCCG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.