miRNA display CGI


Results 1 - 19 of 19 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
321 5' -53.7 AC_000010.1 + 17870 0.66 0.684005
Target:  5'- gGGAUCGccucugguauuaauGGGguGGUGGAucuGGCCAaCCa -3'
miRNA:   3'- -CCUAGU--------------CUCguCCGUCUu--UCGGUgGG- -5'
321 5' -53.7 AC_000010.1 + 23345 0.66 0.676009
Target:  5'- aGAggCGGAGCugguGGCuguGGGcuucAGCUACCCa -3'
miRNA:   3'- cCUa-GUCUCGu---CCGu--CUU----UCGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 13598 0.66 0.676009
Target:  5'- gGGAUagAGAGCcuGGUGGAuaagauGAGCCGCUg -3'
miRNA:   3'- -CCUAg-UCUCGu-CCGUCU------UUCGGUGGg -5'
321 5' -53.7 AC_000010.1 + 4867 0.66 0.676009
Target:  5'- --cUCGGAGCAGGgG---GGCCACUUc -3'
miRNA:   3'- ccuAGUCUCGUCCgUcuuUCGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 25425 0.66 0.653055
Target:  5'- aGGAUguGAGCGG--AGAuGGCCugCUu -3'
miRNA:   3'- -CCUAguCUCGUCcgUCUuUCGGugGG- -5'
321 5' -53.7 AC_000010.1 + 12319 0.66 0.64154
Target:  5'- gGGGUUGGAGCGGG-AGGGcacuacGGCC-UCCa -3'
miRNA:   3'- -CCUAGUCUCGUCCgUCUU------UCGGuGGG- -5'
321 5' -53.7 AC_000010.1 + 5333 0.66 0.64154
Target:  5'- cGAUCGGcAGCGGuucucgaccaGCAGGAugagccugaAGCgCACCCu -3'
miRNA:   3'- cCUAGUC-UCGUC----------CGUCUU---------UCG-GUGGG- -5'
321 5' -53.7 AC_000010.1 + 18070 0.67 0.618493
Target:  5'- aGAUCGGGGC--GCGGAcgcuuGUCGCCCc -3'
miRNA:   3'- cCUAGUCUCGucCGUCUuu---CGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 32909 0.67 0.606984
Target:  5'- ---aCGGAGCGGcGCAGAcAGCgACUg -3'
miRNA:   3'- ccuaGUCUCGUC-CGUCUuUCGgUGGg -5'
321 5' -53.7 AC_000010.1 + 35142 0.67 0.600089
Target:  5'- ---gCAGAGCAGaCAGGAGaacuauaaacugacuGCCGCCUg -3'
miRNA:   3'- ccuaGUCUCGUCcGUCUUU---------------CGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 15184 0.67 0.584047
Target:  5'- uGGAgCAGAGCAGGUguacuGGUCACUUc -3'
miRNA:   3'- -CCUaGUCUCGUCCGucuu-UCGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 32667 0.67 0.576057
Target:  5'- --uUCAGAGCGGGCcaaucuuGGAucagugauagauauaAAGCCAUCg -3'
miRNA:   3'- ccuAGUCUCGUCCG-------UCU---------------UUCGGUGGg -5'
321 5' -53.7 AC_000010.1 + 22198 0.68 0.538774
Target:  5'- gGGAacuggCAGGuCAGGCAGGAuGUCGCuCCa -3'
miRNA:   3'- -CCUa----GUCUcGUCCGUCUUuCGGUG-GG- -5'
321 5' -53.7 AC_000010.1 + 8592 0.68 0.516578
Target:  5'- uGGAUCuGucGCcucuGGguGAAAGCUACCg -3'
miRNA:   3'- -CCUAGuCu-CGu---CCguCUUUCGGUGGg -5'
321 5' -53.7 AC_000010.1 + 16527 0.69 0.462849
Target:  5'- gGGAUgaugauauucUGGAGCAGGCGGcu-GaCCGCCUg -3'
miRNA:   3'- -CCUA----------GUCUCGUCCGUCuuuC-GGUGGG- -5'
321 5' -53.7 AC_000010.1 + 26022 0.72 0.330223
Target:  5'- aGGAggCAGAGgAGGUGGAAGaagcaaccGCCGCCa -3'
miRNA:   3'- -CCUa-GUCUCgUCCGUCUUU--------CGGUGGg -5'
321 5' -53.7 AC_000010.1 + 12934 0.72 0.313718
Target:  5'- uGGGUCAGgaAGaCAcuGGCAGcuugGAAGCCACCUu -3'
miRNA:   3'- -CCUAGUC--UC-GU--CCGUC----UUUCGGUGGG- -5'
321 5' -53.7 AC_000010.1 + 15903 0.79 0.114402
Target:  5'- cGGA--AGAGCAGGCGGAGAcgcaucgccaggcGCCACCg -3'
miRNA:   3'- -CCUagUCUCGUCCGUCUUU-------------CGGUGGg -5'
321 5' -53.7 AC_000010.1 + 17513 1.13 0.000382
Target:  5'- gGGAUCAGAGCAGGCAGAAAGCCACCCc -3'
miRNA:   3'- -CCUAGUCUCGUCCGUCUUUCGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.