miRNA display CGI


Results 1 - 4 of 4 are showing below:
Show page:



<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
3210 3' -44.8 NC_001506.1 + 3400 1.14 0.000138
Target:  5'- aGCCUUAUGAAGGGGUCUUUCAAUACAg -3'
miRNA:   3'- -CGGAAUACUUCCCCAGAAAGUUAUGU- -5'
3210 3' -44.8 NC_001506.1 + 3339 0.79 0.065543
Target:  5'- aGCCU-----GGGGGUCUUUCAGUAUg -3'
miRNA:   3'- -CGGAauacuUCCCCAGAAAGUUAUGu -5'
3210 3' -44.8 NC_001506.1 + 2807 0.97 0.002877
Target:  5'- aGCCUUAUGAAGGGGUCUUUCAu---- -3'
miRNA:   3'- -CGGAAUACUUCCCCAGAAAGUuaugu -5'
3210 3' -44.8 NC_001506.1 + 126 0.7 0.266323
Target:  5'- aGCCU-----GGGGGUCUUUCAuUugGg -3'
miRNA:   3'- -CGGAauacuUCCCCAGAAAGUuAugU- -5'
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home



TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.