miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32100 3' -54.4 NC_007016.1 + 81101 0.66 0.904817
Target:  5'- uCGUGCGCC-AACGCGuGUcGUGCAu -3'
miRNA:   3'- uGCGCGUGGcUUGUGCuCAcUACGUu -5'
32100 3' -54.4 NC_007016.1 + 111378 0.66 0.898256
Target:  5'- uCGCGUuguCCGGuCGCGAG-GGUGUAAa -3'
miRNA:   3'- uGCGCGu--GGCUuGUGCUCaCUACGUU- -5'
32100 3' -54.4 NC_007016.1 + 103465 0.67 0.891447
Target:  5'- gGCGCGCuGCCGcGCACGugaaGGUGAUugGCu- -3'
miRNA:   3'- -UGCGCG-UGGCuUGUGC----UCACUA--CGuu -5'
32100 3' -54.4 NC_007016.1 + 91465 0.67 0.884396
Target:  5'- gGCGgGCACCGAACAgGGGcGGUaCGu -3'
miRNA:   3'- -UGCgCGUGGCUUGUgCUCaCUAcGUu -5'
32100 3' -54.4 NC_007016.1 + 116336 0.67 0.884396
Target:  5'- -gGCGCGCCGGuacgccgcuuGCGUGAGUGAggugGCGc -3'
miRNA:   3'- ugCGCGUGGCU----------UGUGCUCACUa---CGUu -5'
32100 3' -54.4 NC_007016.1 + 70755 0.68 0.853858
Target:  5'- gACGCGCACCGuAAgACGAG-GGUcugGCu- -3'
miRNA:   3'- -UGCGCGUGGC-UUgUGCUCaCUA---CGuu -5'
32100 3' -54.4 NC_007016.1 + 89234 0.68 0.828682
Target:  5'- aACGUuCgACCGaAACACGAGUccGAUGCAAc -3'
miRNA:   3'- -UGCGcG-UGGC-UUGUGCUCA--CUACGUU- -5'
32100 3' -54.4 NC_007016.1 + 116728 0.68 0.810931
Target:  5'- aGCGUGCACUGAG-GCGAGgaggGcgGCGAu -3'
miRNA:   3'- -UGCGCGUGGCUUgUGCUCa---CuaCGUU- -5'
32100 3' -54.4 NC_007016.1 + 17912 0.71 0.671651
Target:  5'- -aGCGCGCgGAcCGCGAGcUGGUGCu- -3'
miRNA:   3'- ugCGCGUGgCUuGUGCUC-ACUACGuu -5'
32100 3' -54.4 NC_007016.1 + 13141 0.72 0.608281
Target:  5'- gACGCGCGCCGGAaaaGCGAGg---GCGc -3'
miRNA:   3'- -UGCGCGUGGCUUg--UGCUCacuaCGUu -5'
32100 3' -54.4 NC_007016.1 + 55614 1.05 0.005135
Target:  5'- cACGCGCACCGAACACGAGUGAUGCAAc -3'
miRNA:   3'- -UGCGCGUGGCUUGUGCUCACUACGUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.