Results 1 - 10 of 10 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32100 | 5' | -48.7 | NC_007016.1 | + | 93388 | 0.66 | 0.99826 |
Target: 5'- uGCUCGaUGaCGCCGUGga-GGC-CGCa -3' miRNA: 3'- -CGAGUgAUaGUGGUACaaaCCGaGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 9373 | 0.66 | 0.997493 |
Target: 5'- aGUUCugUcUCaaacagGCCGUGUaUUGGCUcCGCc -3' miRNA: 3'- -CGAGugAuAG------UGGUACA-AACCGA-GCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 17726 | 0.66 | 0.997493 |
Target: 5'- --cCAUUGUCGCCGUuaaUGGCUCauGCg -3' miRNA: 3'- cgaGUGAUAGUGGUAcaaACCGAG--CG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 107614 | 0.66 | 0.997448 |
Target: 5'- cCUCaACUGUCGCCAgcgGUUuccccUGGUuacauguUCGCc -3' miRNA: 3'- cGAG-UGAUAGUGGUa--CAA-----ACCG-------AGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 63292 | 0.67 | 0.995108 |
Target: 5'- cGCUCACgcggcCACCG-GUUcucccUGGC-CGCa -3' miRNA: 3'- -CGAGUGaua--GUGGUaCAA-----ACCGaGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 76111 | 0.67 | 0.993359 |
Target: 5'- gGCUUACcAUCgccuguGCCAUGUUUacGUUCGCg -3' miRNA: 3'- -CGAGUGaUAG------UGGUACAAAc-CGAGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 41234 | 0.69 | 0.980888 |
Target: 5'- cGUUCACUGUCAggaccuguuucUCAUGUUUccaggGGaCUCGUa -3' miRNA: 3'- -CGAGUGAUAGU-----------GGUACAAA-----CC-GAGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 17556 | 0.7 | 0.963618 |
Target: 5'- aGCUUACUcgCACCAcGg--GGCagggCGCg -3' miRNA: 3'- -CGAGUGAuaGUGGUaCaaaCCGa---GCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 48661 | 0.71 | 0.959928 |
Target: 5'- aCUCG--GUCGCCGUccugGGCUCGCg -3' miRNA: 3'- cGAGUgaUAGUGGUAcaaaCCGAGCG- -5' |
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32100 | 5' | -48.7 | NC_007016.1 | + | 55576 | 1.16 | 0.004921 |
Target: 5'- aGCUCACUAUCACCAUGUUUGGCUCGCu -3' miRNA: 3'- -CGAGUGAUAGUGGUACAAACCGAGCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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