miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32101 5' -56 NC_007016.1 + 17381 0.66 0.863097
Target:  5'- aCCCUGGUGgccgccgccgcgcccUGCCCCgUGGUGcgAGu -3'
miRNA:   3'- aGGGACCAUa--------------GCGGGGgAUCGCaaUC- -5'
32101 5' -56 NC_007016.1 + 61527 0.66 0.854543
Target:  5'- aUCUCUGGUcgUGCaggaCUCUAGCGg--- -3'
miRNA:   3'- -AGGGACCAuaGCGg---GGGAUCGCaauc -5'
32101 5' -56 NC_007016.1 + 117697 0.67 0.821405
Target:  5'- gUCCCUGGUGgcgGCCgCCUGcGCGcuguUUAGc -3'
miRNA:   3'- -AGGGACCAUag-CGGgGGAU-CGC----AAUC- -5'
32101 5' -56 NC_007016.1 + 75394 0.68 0.804648
Target:  5'- aCCCaccuuauagcaguggGGUAcgcgcacgcaUCGCCCCUUGGCGUa-- -3'
miRNA:   3'- aGGGa--------------CCAU----------AGCGGGGGAUCGCAauc -5'
32101 5' -56 NC_007016.1 + 13168 0.68 0.80375
Target:  5'- cCUCUGG---CGCCCCCgGGCGUcAGc -3'
miRNA:   3'- aGGGACCauaGCGGGGGaUCGCAaUC- -5'
32101 5' -56 NC_007016.1 + 123584 0.68 0.794679
Target:  5'- gCCCUG--AUCGCCCCC-GGCGc--- -3'
miRNA:   3'- aGGGACcaUAGCGGGGGaUCGCaauc -5'
32101 5' -56 NC_007016.1 + 88436 0.69 0.7275
Target:  5'- gCCCUGGUAUCGUCCUgUucaaaccccGCGUUu- -3'
miRNA:   3'- aGGGACCAUAGCGGGGgAu--------CGCAAuc -5'
32101 5' -56 NC_007016.1 + 91689 0.69 0.716484
Target:  5'- gCCCUGGUGugcagcagcUCGUCCCUggagaugUAGuCGUUAGc -3'
miRNA:   3'- aGGGACCAU---------AGCGGGGG-------AUC-GCAAUC- -5'
32101 5' -56 NC_007016.1 + 3307 0.7 0.687049
Target:  5'- aUCCCUGaaaagaagCGCCCUCUGGCGa--- -3'
miRNA:   3'- -AGGGACcaua----GCGGGGGAUCGCaauc -5'
32101 5' -56 NC_007016.1 + 70417 0.72 0.533124
Target:  5'- aCCCUGGgacgcgCGCCCCCacGCGUUc- -3'
miRNA:   3'- aGGGACCaua---GCGGGGGauCGCAAuc -5'
32101 5' -56 NC_007016.1 + 60776 1.1 0.002184
Target:  5'- gUCCCUGGUAUCGCCCCCUAGCGUUAGa -3'
miRNA:   3'- -AGGGACCAUAGCGGGGGAUCGCAAUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.