miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32102 3' -48.6 NC_007016.1 + 43048 0.66 0.998811
Target:  5'- uACGGUGUgugAGGUCGCGguggACAA-CGGa -3'
miRNA:   3'- cUGCUACG---UCUAGUGCaa--UGUUcGCC- -5'
32102 3' -48.6 NC_007016.1 + 16583 0.66 0.998252
Target:  5'- cGGCGAcGCGGA-CGCGgcGCGcGUGGc -3'
miRNA:   3'- -CUGCUaCGUCUaGUGCaaUGUuCGCC- -5'
32102 3' -48.6 NC_007016.1 + 122893 0.67 0.997487
Target:  5'- gGGCGAUGCGcugcugCugGUU-CAGGUGGu -3'
miRNA:   3'- -CUGCUACGUcua---GugCAAuGUUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 31704 0.67 0.99701
Target:  5'- cACGGuUGCAGGUUGCGaccgaUGCcGGCGGc -3'
miRNA:   3'- cUGCU-ACGUCUAGUGCa----AUGuUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 116705 0.68 0.993278
Target:  5'- cGGCGAUGCgcacgggGGAUCucCGcaGCAGGUGGc -3'
miRNA:   3'- -CUGCUACG-------UCUAGu-GCaaUGUUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 5679 0.68 0.992338
Target:  5'- --aGGUGCAGAUCGcCGggcguCAGGCGu -3'
miRNA:   3'- cugCUACGUCUAGU-GCaau--GUUCGCc -5'
32102 3' -48.6 NC_007016.1 + 119332 0.68 0.991176
Target:  5'- cGGCGGUGCAGGUgA-GagGgGGGCGGg -3'
miRNA:   3'- -CUGCUACGUCUAgUgCaaUgUUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 41119 0.69 0.986838
Target:  5'- gGGCGGacGCAG-UCACGUUugAGGUGa -3'
miRNA:   3'- -CUGCUa-CGUCuAGUGCAAugUUCGCc -5'
32102 3' -48.6 NC_007016.1 + 76493 0.71 0.955992
Target:  5'- uGACcgGAUcCGGAUCGCGUUcuggaucgagaucGCGAGCGGu -3'
miRNA:   3'- -CUG--CUAcGUCUAGUGCAA-------------UGUUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 12779 0.71 0.952248
Target:  5'- cGCGAcuauaucgGaCAGGUCGCGUgcCAGGCGGu -3'
miRNA:   3'- cUGCUa-------C-GUCUAGUGCAauGUUCGCC- -5'
32102 3' -48.6 NC_007016.1 + 62328 1.11 0.010019
Target:  5'- cGACGAUGCAGAUCACGUUACAAGCGGc -3'
miRNA:   3'- -CUGCUACGUCUAGUGCAAUGUUCGCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.