miRNA display CGI


Results 1 - 20 of 38 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32102 5' -56 NC_007016.1 + 14826 0.66 0.884394
Target:  5'- -cCUGCCUGUuGGAGGC-CGCG--GCc -3'
miRNA:   3'- acGGCGGACAuUCUCCGuGCGUagCG- -5'
32102 5' -56 NC_007016.1 + 117650 0.66 0.884394
Target:  5'- cGCCGCCucuggacaaauUGgcGGAGGCcaucgGCGUuUCGg -3'
miRNA:   3'- aCGGCGG-----------ACauUCUCCG-----UGCGuAGCg -5'
32102 5' -56 NC_007016.1 + 124111 0.66 0.87723
Target:  5'- cGUgGCCU-UGAGgucAGGUgugACGCGUCGCc -3'
miRNA:   3'- aCGgCGGAcAUUC---UCCG---UGCGUAGCG- -5'
32102 5' -56 NC_007016.1 + 124478 0.66 0.869841
Target:  5'- uUGUaCGCCUGUucuccguGGGcCACGCAUUGUc -3'
miRNA:   3'- -ACG-GCGGACAuuc----UCC-GUGCGUAGCG- -5'
32102 5' -56 NC_007016.1 + 26128 0.66 0.862232
Target:  5'- cGCaGUCUGaaucGAGGGGCGgGCA-CGCa -3'
miRNA:   3'- aCGgCGGACa---UUCUCCGUgCGUaGCG- -5'
32102 5' -56 NC_007016.1 + 62622 0.66 0.854409
Target:  5'- cUGCCGCC-GUAAuGAcGGUAgguCGCcaGUCGCu -3'
miRNA:   3'- -ACGGCGGaCAUU-CU-CCGU---GCG--UAGCG- -5'
32102 5' -56 NC_007016.1 + 104420 0.66 0.854409
Target:  5'- cGCCcagcGCCUGggccAGGCGCGCGgcgGCa -3'
miRNA:   3'- aCGG----CGGACauucUCCGUGCGUag-CG- -5'
32102 5' -56 NC_007016.1 + 122903 0.66 0.854409
Target:  5'- cUGCUGCUgGUucAGGuGGUACucaaugGCAUCGCg -3'
miRNA:   3'- -ACGGCGGaCA--UUCuCCGUG------CGUAGCG- -5'
32102 5' -56 NC_007016.1 + 22038 0.66 0.846377
Target:  5'- cGCCacaUCUGgacGGGAGGCACGUG-CGCc -3'
miRNA:   3'- aCGGc--GGACa--UUCUCCGUGCGUaGCG- -5'
32102 5' -56 NC_007016.1 + 116538 0.66 0.845563
Target:  5'- uUGCCaCCUGcugcGGAGaucccccGUGCGCAUCGCc -3'
miRNA:   3'- -ACGGcGGACau--UCUC-------CGUGCGUAGCG- -5'
32102 5' -56 NC_007016.1 + 51655 0.67 0.838145
Target:  5'- uUGCUGUC-GUGcgccGGGGGCcCGCAggCGCg -3'
miRNA:   3'- -ACGGCGGaCAU----UCUCCGuGCGUa-GCG- -5'
32102 5' -56 NC_007016.1 + 106787 0.67 0.838145
Target:  5'- gUGCCGCgUUGUuGGcGaGCACGCAcCGUa -3'
miRNA:   3'- -ACGGCG-GACAuUCuC-CGUGCGUaGCG- -5'
32102 5' -56 NC_007016.1 + 70594 0.67 0.835638
Target:  5'- aUGUCGUUugUGUGcauaaugaacgcguGGGGGCGCGCGUCcCa -3'
miRNA:   3'- -ACGGCGG--ACAU--------------UCUCCGUGCGUAGcG- -5'
32102 5' -56 NC_007016.1 + 130329 0.67 0.82972
Target:  5'- cGCCGCCggGaGGGGGGCuggggcccgggGCGCcUCGg -3'
miRNA:   3'- aCGGCGGa-CaUUCUCCG-----------UGCGuAGCg -5'
32102 5' -56 NC_007016.1 + 99538 0.67 0.82111
Target:  5'- cGUCGUCUGacgacgAAGGGGCcccACGUAggcgCGCa -3'
miRNA:   3'- aCGGCGGACa-----UUCUCCG---UGCGUa---GCG- -5'
32102 5' -56 NC_007016.1 + 116314 0.67 0.82111
Target:  5'- gGuuGCCgGUcggggaacGGGAGGCGCGCcgGUaCGCc -3'
miRNA:   3'- aCggCGGaCA--------UUCUCCGUGCG--UA-GCG- -5'
32102 5' -56 NC_007016.1 + 119751 0.67 0.813209
Target:  5'- cGCCGCCUGggccacagguucuGGugguugucgaacaaGGGCACGgAUCGg -3'
miRNA:   3'- aCGGCGGACau-----------UC--------------UCCGUGCgUAGCg -5'
32102 5' -56 NC_007016.1 + 26261 0.67 0.812322
Target:  5'- cGCCGgCUGUGGGGgcGGCGgcUGCGUuUGCu -3'
miRNA:   3'- aCGGCgGACAUUCU--CCGU--GCGUA-GCG- -5'
32102 5' -56 NC_007016.1 + 52587 0.67 0.803366
Target:  5'- gGgUGCaUGUuu-AGGCACGCAUCGUa -3'
miRNA:   3'- aCgGCGgACAuucUCCGUGCGUAGCG- -5'
32102 5' -56 NC_007016.1 + 62169 0.67 0.803366
Target:  5'- cGCCGCUUGUAAcguGAucuGCAuCGuCGUCGCu -3'
miRNA:   3'- aCGGCGGACAUU---CUc--CGU-GC-GUAGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.