miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32103 3' -57.9 NC_007016.1 + 982 0.66 0.787083
Target:  5'- cCAcCCAucCGCuacaaaaaaccGCCUGCcuGCCGCUGACg -3'
miRNA:   3'- -GUuGGUucGCG-----------CGGACG--CGGUGACUG- -5'
32103 3' -57.9 NC_007016.1 + 47132 0.66 0.787083
Target:  5'- aAACguGcCGCGCCUGCGcCCACgucuuugGAUa -3'
miRNA:   3'- gUUGguUcGCGCGGACGC-GGUGa------CUG- -5'
32103 3' -57.9 NC_007016.1 + 104581 0.66 0.777752
Target:  5'- -uGCCGccGCGCGCCUG-GCCcaggcGCUGGg -3'
miRNA:   3'- guUGGUu-CGCGCGGACgCGG-----UGACUg -5'
32103 3' -57.9 NC_007016.1 + 119019 0.67 0.73919
Target:  5'- gCAACC-GGCGCGCCccccGCGcCCGCcgcGAUa -3'
miRNA:   3'- -GUUGGuUCGCGCGGa---CGC-GGUGa--CUG- -5'
32103 3' -57.9 NC_007016.1 + 14984 0.67 0.733259
Target:  5'- uCAuCCAGGCGCacaaCCUGUGCUACUccaccaugauacacgGACg -3'
miRNA:   3'- -GUuGGUUCGCGc---GGACGCGGUGA---------------CUG- -5'
32103 3' -57.9 NC_007016.1 + 78900 0.67 0.729286
Target:  5'- aGGCCAAGgCGCGCCUauuggGCGCgAUUaGAa -3'
miRNA:   3'- gUUGGUUC-GCGCGGA-----CGCGgUGA-CUg -5'
32103 3' -57.9 NC_007016.1 + 116328 0.67 0.729286
Target:  5'- gAACgGgaGGCGCGCCgguaCGCCGCUuGCg -3'
miRNA:   3'- gUUGgU--UCGCGCGGac--GCGGUGAcUG- -5'
32103 3' -57.9 NC_007016.1 + 116432 0.67 0.719298
Target:  5'- gAACCGGcCGCGCCgccaagcgGCGCgGCUGcCu -3'
miRNA:   3'- gUUGGUUcGCGCGGa-------CGCGgUGACuG- -5'
32103 3' -57.9 NC_007016.1 + 123909 0.67 0.719298
Target:  5'- uGACgAGGUGCGCCaggcGUGCCAgaacuUUGACu -3'
miRNA:   3'- gUUGgUUCGCGCGGa---CGCGGU-----GACUG- -5'
32103 3' -57.9 NC_007016.1 + 67799 0.67 0.719298
Target:  5'- uCAACCAGGgGUGCCggGagaaGCCccgguucgcauACUGGCa -3'
miRNA:   3'- -GUUGGUUCgCGCGGa-Cg---CGG-----------UGACUG- -5'
32103 3' -57.9 NC_007016.1 + 116801 0.67 0.709233
Target:  5'- uUAACCGGGUGCGUUgGCGgCCACaaccuUGGCc -3'
miRNA:   3'- -GUUGGUUCGCGCGGaCGC-GGUG-----ACUG- -5'
32103 3' -57.9 NC_007016.1 + 76887 0.67 0.699102
Target:  5'- -uGCCAccAGCGCGUcuCUGCGuCCGCcaGACu -3'
miRNA:   3'- guUGGU--UCGCGCG--GACGC-GGUGa-CUG- -5'
32103 3' -57.9 NC_007016.1 + 84256 0.68 0.678675
Target:  5'- aGACUuauGGCGUGUgCUGCGCCAuCUGcCg -3'
miRNA:   3'- gUUGGu--UCGCGCG-GACGCGGU-GACuG- -5'
32103 3' -57.9 NC_007016.1 + 125641 0.68 0.678675
Target:  5'- aUAGCUcuguGGCGUGCgcgagaaaaUGCGCCcACUGACg -3'
miRNA:   3'- -GUUGGu---UCGCGCGg--------ACGCGG-UGACUG- -5'
32103 3' -57.9 NC_007016.1 + 85486 0.68 0.668399
Target:  5'- --uCCGGGUGCaGCCUGCGCgGgaGAg -3'
miRNA:   3'- guuGGUUCGCG-CGGACGCGgUgaCUg -5'
32103 3' -57.9 NC_007016.1 + 91185 0.68 0.668399
Target:  5'- cCGGCUuaaaaaUGCGCUgGCGCCGCUGAUg -3'
miRNA:   3'- -GUUGGuuc---GCGCGGaCGCGGUGACUG- -5'
32103 3' -57.9 NC_007016.1 + 62590 0.68 0.658092
Target:  5'- uGGCgCAGGCGCGCUugguUGUGCgGCggGACc -3'
miRNA:   3'- gUUG-GUUCGCGCGG----ACGCGgUGa-CUG- -5'
32103 3' -57.9 NC_007016.1 + 16741 0.68 0.637424
Target:  5'- gGGCCAcGCGCGCC-GCGuCCGCg--- -3'
miRNA:   3'- gUUGGUuCGCGCGGaCGC-GGUGacug -5'
32103 3' -57.9 NC_007016.1 + 43738 0.68 0.637424
Target:  5'- gGACCAAGUaauucaGCGCCUugccGCaCUACUGGCu -3'
miRNA:   3'- gUUGGUUCG------CGCGGA----CGcGGUGACUG- -5'
32103 3' -57.9 NC_007016.1 + 36114 0.68 0.637424
Target:  5'- gAACCGAGCcgccCGCCUugGCGCguUUGACu -3'
miRNA:   3'- gUUGGUUCGc---GCGGA--CGCGguGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.