miRNA display CGI


Results 21 - 37 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32103 3' -57.9 NC_007016.1 + 7865 0.69 0.585819
Target:  5'- -cGCCAcGGgGCGUCUGCGCCcCgUGAUa -3'
miRNA:   3'- guUGGU-UCgCGCGGACGCGGuG-ACUG- -5'
32103 3' -57.9 NC_007016.1 + 16408 0.69 0.585819
Target:  5'- uCAACCuAGCcCGCCUGCagacguuuaaggGCCACgggGGCu -3'
miRNA:   3'- -GUUGGuUCGcGCGGACG------------CGGUGa--CUG- -5'
32103 3' -57.9 NC_007016.1 + 76651 0.69 0.575571
Target:  5'- --uUCAGGUGUGCCUGCcggcgccgccGCCGCUG-Cg -3'
miRNA:   3'- guuGGUUCGCGCGGACG----------CGGUGACuG- -5'
32103 3' -57.9 NC_007016.1 + 39535 0.69 0.565364
Target:  5'- gCAGCCAGGUGCGCaa--GCCGCguauagGGCu -3'
miRNA:   3'- -GUUGGUUCGCGCGgacgCGGUGa-----CUG- -5'
32103 3' -57.9 NC_007016.1 + 114450 0.7 0.555205
Target:  5'- aCAGgUAAGCagucGCGCuuCUGCGCgGCUGGCg -3'
miRNA:   3'- -GUUgGUUCG----CGCG--GACGCGgUGACUG- -5'
32103 3' -57.9 NC_007016.1 + 130038 0.7 0.555205
Target:  5'- cCGGCCGGGCGCcugggggcccccGCCggGCGCCGCcgcuaggGGCc -3'
miRNA:   3'- -GUUGGUUCGCG------------CGGa-CGCGGUGa------CUG- -5'
32103 3' -57.9 NC_007016.1 + 21856 0.7 0.5451
Target:  5'- aAACCAGGCGUgGCCa--GCCAcCUGGCg -3'
miRNA:   3'- gUUGGUUCGCG-CGGacgCGGU-GACUG- -5'
32103 3' -57.9 NC_007016.1 + 8459 0.7 0.535056
Target:  5'- cCGACCccuaGCGCCgGCGCCcuACUGGCc -3'
miRNA:   3'- -GUUGGuucgCGCGGaCGCGG--UGACUG- -5'
32103 3' -57.9 NC_007016.1 + 130174 0.7 0.525076
Target:  5'- cCGGCCGAGCccggcgGCGCC-GCGCC-CcGACg -3'
miRNA:   3'- -GUUGGUUCG------CGCGGaCGCGGuGaCUG- -5'
32103 3' -57.9 NC_007016.1 + 21079 0.71 0.485925
Target:  5'- aUAGCCGGGcCGCGCCuUGUGgC-CUGACc -3'
miRNA:   3'- -GUUGGUUC-GCGCGG-ACGCgGuGACUG- -5'
32103 3' -57.9 NC_007016.1 + 104432 0.71 0.476352
Target:  5'- gGGCCAGGCGCGCg-GCGgCAUggGGCu -3'
miRNA:   3'- gUUGGUUCGCGCGgaCGCgGUGa-CUG- -5'
32103 3' -57.9 NC_007016.1 + 117687 0.72 0.439043
Target:  5'- gCGGCCGccuGCGCGCUguuuagccucgGCGCCGCUG-Cg -3'
miRNA:   3'- -GUUGGUu--CGCGCGGa----------CGCGGUGACuG- -5'
32103 3' -57.9 NC_007016.1 + 125575 0.73 0.386366
Target:  5'- aAGCCAccaaggacaGGCGUGCCggugcGCGCCagcuGCUGGCa -3'
miRNA:   3'- gUUGGU---------UCGCGCGGa----CGCGG----UGACUG- -5'
32103 3' -57.9 NC_007016.1 + 70957 0.73 0.353642
Target:  5'- gGACUggGCGCGCCgccuccugaGCGCCccguccgcACUGGCc -3'
miRNA:   3'- gUUGGuuCGCGCGGa--------CGCGG--------UGACUG- -5'
32103 3' -57.9 NC_007016.1 + 119601 0.76 0.237053
Target:  5'- -cGCCAAGCGgGUCUGCGCCGgUGu- -3'
miRNA:   3'- guUGGUUCGCgCGGACGCGGUgACug -5'
32103 3' -57.9 NC_007016.1 + 110995 0.8 0.142881
Target:  5'- -cGCCGAGCGCGUUUGCGuCCAgaGACa -3'
miRNA:   3'- guUGGUUCGCGCGGACGC-GGUgaCUG- -5'
32103 3' -57.9 NC_007016.1 + 62741 1.08 0.001488
Target:  5'- aCAACCAAGCGCGCCUGCGCCACUGACc -3'
miRNA:   3'- -GUUGGUUCGCGCGGACGCGGUGACUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.