miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32104 3' -58.3 NC_007016.1 + 39621 0.66 0.797921
Target:  5'- gCGUCucGUGCgAGGUcGGGUGCAgCa -3'
miRNA:   3'- -GCAGucCACGgUCCAaCCCGUGUgGc -5'
32104 3' -58.3 NC_007016.1 + 28894 0.66 0.797921
Target:  5'- --cCAGGagcgagGCCAGGUUGaGGC--GCCGg -3'
miRNA:   3'- gcaGUCCa-----CGGUCCAAC-CCGugUGGC- -5'
32104 3' -58.3 NC_007016.1 + 76570 0.66 0.788913
Target:  5'- -cUC-GGUGCCAcGGUUcccgagaacgGGGCGCAUCa -3'
miRNA:   3'- gcAGuCCACGGU-CCAA----------CCCGUGUGGc -5'
32104 3' -58.3 NC_007016.1 + 83564 0.66 0.76109
Target:  5'- gGUCAcGUGCCAuauuGGUUGGGCuugaguGCGCa- -3'
miRNA:   3'- gCAGUcCACGGU----CCAACCCG------UGUGgc -5'
32104 3' -58.3 NC_007016.1 + 108095 0.67 0.751578
Target:  5'- cCGUCGGaGUGCCccGUaaGGGCAaaaACCGu -3'
miRNA:   3'- -GCAGUC-CACGGucCAa-CCCGUg--UGGC- -5'
32104 3' -58.3 NC_007016.1 + 116321 0.67 0.732251
Target:  5'- gGUCGGGgaaCGGGa--GGCGCGCCGg -3'
miRNA:   3'- gCAGUCCacgGUCCaacCCGUGUGGC- -5'
32104 3' -58.3 NC_007016.1 + 63971 0.67 0.712582
Target:  5'- aCGUaaagUAGGUGCCAGGcgUGGGgAC-CUa -3'
miRNA:   3'- -GCA----GUCCACGGUCCa-ACCCgUGuGGc -5'
32104 3' -58.3 NC_007016.1 + 14390 0.68 0.682593
Target:  5'- aCGUC-GGUGuCCGGGaUGGGguCGCaCGu -3'
miRNA:   3'- -GCAGuCCAC-GGUCCaACCCguGUG-GC- -5'
32104 3' -58.3 NC_007016.1 + 13443 0.68 0.669469
Target:  5'- aCGUCuGGUggcggcugaacggcGCCggcgGGGgcGGGCGCAUCGg -3'
miRNA:   3'- -GCAGuCCA--------------CGG----UCCaaCCCGUGUGGC- -5'
32104 3' -58.3 NC_007016.1 + 115769 0.68 0.64207
Target:  5'- gCG-CGGG-GUCAGGcgGGGguCACCGa -3'
miRNA:   3'- -GCaGUCCaCGGUCCaaCCCguGUGGC- -5'
32104 3' -58.3 NC_007016.1 + 19548 0.75 0.308825
Target:  5'- aGUCGGGggaggcGCCAGcGUaGGGCugGCCGc -3'
miRNA:   3'- gCAGUCCa-----CGGUC-CAaCCCGugUGGC- -5'
32104 3' -58.3 NC_007016.1 + 70231 1.09 0.001464
Target:  5'- cCGUCAGGUGCCAGGUUGGGCACACCGa -3'
miRNA:   3'- -GCAGUCCACGGUCCAACCCGUGUGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.