miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32104 5' -55 NC_007016.1 + 36850 0.65 0.91693
Target:  5'- gUGCA--CCACGaCCACC-AGACCGa-- -3'
miRNA:   3'- -ACGUuaGGUGC-GGUGGgUCUGGUacu -5'
32104 5' -55 NC_007016.1 + 19644 0.65 0.91693
Target:  5'- gGUAA-CCGCGCCucucuugaCCGGACCAgggGGc -3'
miRNA:   3'- aCGUUaGGUGCGGug------GGUCUGGUa--CU- -5'
32104 5' -55 NC_007016.1 + 9874 0.65 0.91693
Target:  5'- uUGCGAUcCCGCGCUcCCCuGACaCAa-- -3'
miRNA:   3'- -ACGUUA-GGUGCGGuGGGuCUG-GUacu -5'
32104 5' -55 NC_007016.1 + 114283 0.66 0.910914
Target:  5'- aGCcg-CCACcCCACCCGGAgccaCCcgGAg -3'
miRNA:   3'- aCGuuaGGUGcGGUGGGUCU----GGuaCU- -5'
32104 5' -55 NC_007016.1 + 114311 0.66 0.910914
Target:  5'- aGCcg-CCACcCCACCCGGAgccaCCcgGAg -3'
miRNA:   3'- aCGuuaGGUGcGGUGGGUCU----GGuaCU- -5'
32104 5' -55 NC_007016.1 + 118270 0.66 0.910914
Target:  5'- uUGUuggcCCAgUGcCCACCgGGACCAUGAc -3'
miRNA:   3'- -ACGuua-GGU-GC-GGUGGgUCUGGUACU- -5'
32104 5' -55 NC_007016.1 + 130055 0.66 0.910914
Target:  5'- cGCc--CCGCGCCGCgcgCCGGGCCGc-- -3'
miRNA:   3'- aCGuuaGGUGCGGUG---GGUCUGGUacu -5'
32104 5' -55 NC_007016.1 + 99330 0.66 0.910914
Target:  5'- gGCGucgaaCCACcgacaaGCUACCCAGACCcgGc -3'
miRNA:   3'- aCGUua---GGUG------CGGUGGGUCUGGuaCu -5'
32104 5' -55 NC_007016.1 + 12818 0.66 0.910914
Target:  5'- cGCA--CCAaCGCCaucGCCCAGGCCcccauuaggAUGAu -3'
miRNA:   3'- aCGUuaGGU-GCGG---UGGGUCUGG---------UACU- -5'
32104 5' -55 NC_007016.1 + 114339 0.66 0.910914
Target:  5'- aGCcg-CCACcCCACCCGGAgccaCCcgGAg -3'
miRNA:   3'- aCGuuaGGUGcGGUGGGUCU----GGuaCU- -5'
32104 5' -55 NC_007016.1 + 106209 0.66 0.90465
Target:  5'- cGCucccgGGUCCAcCGCCACCgggcguaGGGCCAauUGAg -3'
miRNA:   3'- aCG-----UUAGGU-GCGGUGGg------UCUGGU--ACU- -5'
32104 5' -55 NC_007016.1 + 10715 0.66 0.89814
Target:  5'- cUGCAaaGUCCACGCCgggcccgucgacGCCCAcACCucccGAa -3'
miRNA:   3'- -ACGU--UAGGUGCGG------------UGGGUcUGGua--CU- -5'
32104 5' -55 NC_007016.1 + 15676 0.66 0.89814
Target:  5'- cGUGAUCCugGCUG-CCAGAUCGUc- -3'
miRNA:   3'- aCGUUAGGugCGGUgGGUCUGGUAcu -5'
32104 5' -55 NC_007016.1 + 15909 0.66 0.884395
Target:  5'- uUGCAcaacagCCGCGCCGCCgCcuuGACCuccUGAu -3'
miRNA:   3'- -ACGUua----GGUGCGGUGG-Gu--CUGGu--ACU- -5'
32104 5' -55 NC_007016.1 + 117476 0.66 0.884395
Target:  5'- gGCAA---GCGCCGCaCCGGACcCAUGu -3'
miRNA:   3'- aCGUUaggUGCGGUG-GGUCUG-GUACu -5'
32104 5' -55 NC_007016.1 + 130056 0.67 0.862033
Target:  5'- cGCGGccCCGCGCCGCCgCcGGCCGg-- -3'
miRNA:   3'- aCGUUa-GGUGCGGUGG-GuCUGGUacu -5'
32104 5' -55 NC_007016.1 + 39546 0.67 0.861253
Target:  5'- cGCAAgCCGCguauaggGCUACCCacaGGACUAUGGu -3'
miRNA:   3'- aCGUUaGGUG-------CGGUGGG---UCUGGUACU- -5'
32104 5' -55 NC_007016.1 + 18056 0.67 0.846027
Target:  5'- cGCGGUCCGCG-CGCUC-GACCAcGGc -3'
miRNA:   3'- aCGUUAGGUGCgGUGGGuCUGGUaCU- -5'
32104 5' -55 NC_007016.1 + 42244 0.67 0.846027
Target:  5'- aGCGAauaaUCUagACGUCACCgAGACCAcGAu -3'
miRNA:   3'- aCGUU----AGG--UGCGGUGGgUCUGGUaCU- -5'
32104 5' -55 NC_007016.1 + 59761 0.68 0.837715
Target:  5'- cGUGAUCCACGaCACCCcuGACUuUGGc -3'
miRNA:   3'- aCGUUAGGUGCgGUGGGu-CUGGuACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.