miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32104 5' -55 NC_007016.1 + 8126 0.72 0.573403
Target:  5'- uUGCGGUCCACGCCGcgccccgcgaaguacCCCAGGuuCCcgcaGUGAa -3'
miRNA:   3'- -ACGUUAGGUGCGGU---------------GGGUCU--GG----UACU- -5'
32104 5' -55 NC_007016.1 + 9874 0.65 0.91693
Target:  5'- uUGCGAUcCCGCGCUcCCCuGACaCAa-- -3'
miRNA:   3'- -ACGUUA-GGUGCGGuGGGuCUG-GUacu -5'
32104 5' -55 NC_007016.1 + 10715 0.66 0.89814
Target:  5'- cUGCAaaGUCCACGCCgggcccgucgacGCCCAcACCucccGAa -3'
miRNA:   3'- -ACGU--UAGGUGCGG------------UGGGUcUGGua--CU- -5'
32104 5' -55 NC_007016.1 + 12802 0.68 0.793376
Target:  5'- gUGCGG-CCAaCGUCGCCCAGGuCCGcGAc -3'
miRNA:   3'- -ACGUUaGGU-GCGGUGGGUCU-GGUaCU- -5'
32104 5' -55 NC_007016.1 + 12818 0.66 0.910914
Target:  5'- cGCA--CCAaCGCCaucGCCCAGGCCcccauuaggAUGAu -3'
miRNA:   3'- aCGUuaGGU-GCGG---UGGGUCUGG---------UACU- -5'
32104 5' -55 NC_007016.1 + 15676 0.66 0.89814
Target:  5'- cGUGAUCCugGCUG-CCAGAUCGUc- -3'
miRNA:   3'- aCGUUAGGugCGGUgGGUCUGGUAcu -5'
32104 5' -55 NC_007016.1 + 15909 0.66 0.884395
Target:  5'- uUGCAcaacagCCGCGCCGCCgCcuuGACCuccUGAu -3'
miRNA:   3'- -ACGUua----GGUGCGGUGG-Gu--CUGGu--ACU- -5'
32104 5' -55 NC_007016.1 + 16733 0.69 0.76487
Target:  5'- cGCGccgcGUCCGCGUCGCcgCCGGAaucCCGUGGg -3'
miRNA:   3'- aCGU----UAGGUGCGGUG--GGUCU---GGUACU- -5'
32104 5' -55 NC_007016.1 + 18056 0.67 0.846027
Target:  5'- cGCGGUCCGCG-CGCUC-GACCAcGGc -3'
miRNA:   3'- aCGUUAGGUGCgGUGGGuCUGGUaCU- -5'
32104 5' -55 NC_007016.1 + 19644 0.65 0.91693
Target:  5'- gGUAA-CCGCGCCucucuugaCCGGACCAgggGGc -3'
miRNA:   3'- aCGUUaGGUGCGGug------GGUCUGGUa--CU- -5'
32104 5' -55 NC_007016.1 + 22713 0.68 0.829206
Target:  5'- aUGUu-UCCACGCgCGCgCCGggcGACCGUGGa -3'
miRNA:   3'- -ACGuuAGGUGCG-GUG-GGU---CUGGUACU- -5'
32104 5' -55 NC_007016.1 + 26943 0.68 0.793376
Target:  5'- cGCGuacguuUCCGCGCCACCCucgauGCCGg-- -3'
miRNA:   3'- aCGUu-----AGGUGCGGUGGGuc---UGGUacu -5'
32104 5' -55 NC_007016.1 + 27065 0.73 0.518273
Target:  5'- gGCGGUaaCCGCGaCACCCAaACCAUGAg -3'
miRNA:   3'- aCGUUA--GGUGCgGUGGGUcUGGUACU- -5'
32104 5' -55 NC_007016.1 + 36850 0.65 0.91693
Target:  5'- gUGCA--CCACGaCCACC-AGACCGa-- -3'
miRNA:   3'- -ACGUuaGGUGC-GGUGGgUCUGGUacu -5'
32104 5' -55 NC_007016.1 + 39546 0.67 0.861253
Target:  5'- cGCAAgCCGCguauaggGCUACCCacaGGACUAUGGu -3'
miRNA:   3'- aCGUUaGGUG-------CGGUGGG---UCUGGUACU- -5'
32104 5' -55 NC_007016.1 + 40679 0.7 0.694487
Target:  5'- uUGCAgauagGUCUcgugACGUCGCCgAGACCAUGu -3'
miRNA:   3'- -ACGU-----UAGG----UGCGGUGGgUCUGGUACu -5'
32104 5' -55 NC_007016.1 + 42244 0.67 0.846027
Target:  5'- aGCGAauaaUCUagACGUCACCgAGACCAcGAu -3'
miRNA:   3'- aCGUU----AGG--UGCGGUGGgUCUGGUaCU- -5'
32104 5' -55 NC_007016.1 + 59761 0.68 0.837715
Target:  5'- cGUGAUCCACGaCACCCcuGACUuUGGc -3'
miRNA:   3'- aCGUUAGGUGCgGUGGGu-CUGGuACU- -5'
32104 5' -55 NC_007016.1 + 70195 1.09 0.002581
Target:  5'- gUGCAAUCCACGCCACCCAGACCAUGAa -3'
miRNA:   3'- -ACGUUAGGUGCGGUGGGUCUGGUACU- -5'
32104 5' -55 NC_007016.1 + 87395 0.68 0.811633
Target:  5'- aGCAA-CCAgGCC-CUCAGGCCA-GAc -3'
miRNA:   3'- aCGUUaGGUgCGGuGGGUCUGGUaCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.