miRNA display CGI


Results 1 - 20 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32105 3' -61 NC_007016.1 + 22868 0.66 0.665499
Target:  5'- aGAUgGCGGaCCGGcgGCGccGAUuGGGCGCa -3'
miRNA:   3'- -UUAgUGCC-GGUCa-CGC--CUGcCCCGCG- -5'
32105 3' -61 NC_007016.1 + 130086 0.66 0.665499
Target:  5'- -uUCGCggGGCCGGgggucccGCGGGgggcCGGGGcCGCc -3'
miRNA:   3'- uuAGUG--CCGGUCa------CGCCU----GCCCC-GCG- -5'
32105 3' -61 NC_007016.1 + 86516 0.66 0.664499
Target:  5'- ---gGCGGCCGgaaacagcguuccGUGUGG-CGGGGUaGCu -3'
miRNA:   3'- uuagUGCCGGU-------------CACGCCuGCCCCG-CG- -5'
32105 3' -61 NC_007016.1 + 35545 0.66 0.655485
Target:  5'- cAUCGCGGCCAGUGCcGACGa-GUa- -3'
miRNA:   3'- uUAGUGCCGGUCACGcCUGCccCGcg -5'
32105 3' -61 NC_007016.1 + 16581 0.66 0.63541
Target:  5'- ---gGCGGCgAc-GCGGACGcGGCGCg -3'
miRNA:   3'- uuagUGCCGgUcaCGCCUGCcCCGCG- -5'
32105 3' -61 NC_007016.1 + 119823 0.66 0.63541
Target:  5'- ---gGgGGCgCAGUcGCGGuAgGGGGCGUg -3'
miRNA:   3'- uuagUgCCG-GUCA-CGCC-UgCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 130366 0.66 0.625365
Target:  5'- --cCGCGGCUuGUGgggcccCGGGCucggggggcgucGGGGCGCg -3'
miRNA:   3'- uuaGUGCCGGuCAC------GCCUG------------CCCCGCG- -5'
32105 3' -61 NC_007016.1 + 129959 0.66 0.615325
Target:  5'- --gCGCGGCCcc--CGGgcccccgaGCGGGGCGCc -3'
miRNA:   3'- uuaGUGCCGGucacGCC--------UGCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 47539 0.67 0.595288
Target:  5'- uAAUCGCcuGGCUGGUGCuccCGGGGgGCu -3'
miRNA:   3'- -UUAGUG--CCGGUCACGccuGCCCCgCG- -5'
32105 3' -61 NC_007016.1 + 13438 0.67 0.575356
Target:  5'- uGGUgGCGGCUgaacGGcgccgGCGGGgGcGGGCGCa -3'
miRNA:   3'- -UUAgUGCCGG----UCa----CGCCUgC-CCCGCG- -5'
32105 3' -61 NC_007016.1 + 13262 0.67 0.575356
Target:  5'- --gCGCGGCUcugGCGGGCGGcaaguacaGGCGUa -3'
miRNA:   3'- uuaGUGCCGGucaCGCCUGCC--------CCGCG- -5'
32105 3' -61 NC_007016.1 + 26259 0.67 0.565445
Target:  5'- -cUCGcCGGCU-GUGgGGGCGGcGGCuGCg -3'
miRNA:   3'- uuAGU-GCCGGuCACgCCUGCC-CCG-CG- -5'
32105 3' -61 NC_007016.1 + 13435 0.67 0.565445
Target:  5'- ---aACGGuCCA-UGUGGACGGcGCGCg -3'
miRNA:   3'- uuagUGCC-GGUcACGCCUGCCcCGCG- -5'
32105 3' -61 NC_007016.1 + 96465 0.67 0.555579
Target:  5'- -uUCGuCGGCgGGUG-GGAauaGGGGCGg -3'
miRNA:   3'- uuAGU-GCCGgUCACgCCUg--CCCCGCg -5'
32105 3' -61 NC_007016.1 + 122812 0.68 0.545763
Target:  5'- --cCACGGCCgAGUugGCaGACGGGuuGCGUg -3'
miRNA:   3'- uuaGUGCCGG-UCA--CGcCUGCCC--CGCG- -5'
32105 3' -61 NC_007016.1 + 105813 0.68 0.507117
Target:  5'- gGAUUugacCGGCCGGUG-GG--GGGGCGCu -3'
miRNA:   3'- -UUAGu---GCCGGUCACgCCugCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 131002 0.69 0.488231
Target:  5'- ----cCGGCCAGcUGCGuGCGaGGGCGUu -3'
miRNA:   3'- uuaguGCCGGUC-ACGCcUGC-CCCGCG- -5'
32105 3' -61 NC_007016.1 + 618 0.69 0.488231
Target:  5'- ----cCGGCCAGcUGCGuGCGaGGGCGUu -3'
miRNA:   3'- uuaguGCCGGUC-ACGCcUGC-CCCGCG- -5'
32105 3' -61 NC_007016.1 + 123407 0.69 0.478913
Target:  5'- ---uGCGGCCAucagcgcccUGgGGAgCGGGGCGCc -3'
miRNA:   3'- uuagUGCCGGUc--------ACgCCU-GCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 47047 0.69 0.469682
Target:  5'- --gUugGGCaucuCGGUGCGuGuuGGGGCGCu -3'
miRNA:   3'- uuaGugCCG----GUCACGC-CugCCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.