Results 1 - 20 of 33 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32105 | 3' | -61 | NC_007016.1 | + | 71137 | 1.08 | 0.000879 |
Target: 5'- gAAUCACGGCCAGUGCGGACGGGGCGCu -3' miRNA: 3'- -UUAGUGCCGGUCACGCCUGCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 118856 | 0.76 | 0.17802 |
Target: 5'- uAUCGCGGCgGGcGCGG--GGGGCGCg -3' miRNA: 3'- uUAGUGCCGgUCaCGCCugCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 30883 | 0.74 | 0.221708 |
Target: 5'- ---gGCGGCC-GUGcCGGGCGGuGGUGCg -3' miRNA: 3'- uuagUGCCGGuCAC-GCCUGCC-CCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 129898 | 0.73 | 0.267909 |
Target: 5'- --gCcCGGCCGGcgGCGGcGCGGGGcCGCg -3' miRNA: 3'- uuaGuGCCGGUCa-CGCC-UGCCCC-GCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 815 | 0.71 | 0.359014 |
Target: 5'- ---uGgGGCCGG-G-GGACGGGGCGUg -3' miRNA: 3'- uuagUgCCGGUCaCgCCUGCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 21654 | 0.71 | 0.372417 |
Target: 5'- --cCGCGGUCAgaagcuGUGCGccaaucccggggacGACGGGGUGCg -3' miRNA: 3'- uuaGUGCCGGU------CACGC--------------CUGCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 119330 | 0.71 | 0.374818 |
Target: 5'- ---gACGG-CGGUGCaggugagagggGGGCGGGGUGCg -3' miRNA: 3'- uuagUGCCgGUCACG-----------CCUGCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 104429 | 0.71 | 0.374818 |
Target: 5'- --cCugGGCCAGgcgcgcgGCGGcAUGGGGCu- -3' miRNA: 3'- uuaGugCCGGUCa------CGCC-UGCCCCGcg -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 73243 | 0.7 | 0.39939 |
Target: 5'- --aCGCGGCCAGgGUacccGCGGGGUGCc -3' miRNA: 3'- uuaGUGCCGGUCaCGcc--UGCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 130200 | 0.7 | 0.416334 |
Target: 5'- --gCGCGGCgCGGgGCGGcCGGGG-GCg -3' miRNA: 3'- uuaGUGCCG-GUCaCGCCuGCCCCgCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 119159 | 0.7 | 0.43371 |
Target: 5'- gAGUCG-GGCgGGgauUGCGGAgGGGGCGa -3' miRNA: 3'- -UUAGUgCCGgUC---ACGCCUgCCCCGCg -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 130323 | 0.7 | 0.43371 |
Target: 5'- --gCGCcGCCGGgcucgGcCGGAcCGGGGCGCu -3' miRNA: 3'- uuaGUGcCGGUCa----C-GCCU-GCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 104067 | 0.69 | 0.460544 |
Target: 5'- cAAUCAacgcaaGGCCAGggugGCGGcCGucaccuGGGCGCu -3' miRNA: 3'- -UUAGUg-----CCGGUCa---CGCCuGC------CCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 47047 | 0.69 | 0.469682 |
Target: 5'- --gUugGGCaucuCGGUGCGuGuuGGGGCGCu -3' miRNA: 3'- uuaGugCCG----GUCACGC-CugCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 123407 | 0.69 | 0.478913 |
Target: 5'- ---uGCGGCCAucagcgcccUGgGGAgCGGGGCGCc -3' miRNA: 3'- uuagUGCCGGUc--------ACgCCU-GCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 131002 | 0.69 | 0.488231 |
Target: 5'- ----cCGGCCAGcUGCGuGCGaGGGCGUu -3' miRNA: 3'- uuaguGCCGGUC-ACGCcUGC-CCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 618 | 0.69 | 0.488231 |
Target: 5'- ----cCGGCCAGcUGCGuGCGaGGGCGUu -3' miRNA: 3'- uuaguGCCGGUC-ACGCcUGC-CCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 105813 | 0.68 | 0.507117 |
Target: 5'- gGAUUugacCGGCCGGUG-GG--GGGGCGCu -3' miRNA: 3'- -UUAGu---GCCGGUCACgCCugCCCCGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 122812 | 0.68 | 0.545763 |
Target: 5'- --cCACGGCCgAGUugGCaGACGGGuuGCGUg -3' miRNA: 3'- uuaGUGCCGG-UCA--CGcCUGCCC--CGCG- -5' |
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32105 | 3' | -61 | NC_007016.1 | + | 96465 | 0.67 | 0.555579 |
Target: 5'- -uUCGuCGGCgGGUG-GGAauaGGGGCGg -3' miRNA: 3'- uuAGU-GCCGgUCACgCCUg--CCCCGCg -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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