miRNA display CGI


Results 21 - 33 of 33 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32105 3' -61 NC_007016.1 + 104067 0.69 0.460544
Target:  5'- cAAUCAacgcaaGGCCAGggugGCGGcCGucaccuGGGCGCu -3'
miRNA:   3'- -UUAGUg-----CCGGUCa---CGCCuGC------CCCGCG- -5'
32105 3' -61 NC_007016.1 + 130323 0.7 0.43371
Target:  5'- --gCGCcGCCGGgcucgGcCGGAcCGGGGCGCu -3'
miRNA:   3'- uuaGUGcCGGUCa----C-GCCU-GCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 119159 0.7 0.43371
Target:  5'- gAGUCG-GGCgGGgauUGCGGAgGGGGCGa -3'
miRNA:   3'- -UUAGUgCCGgUC---ACGCCUgCCCCGCg -5'
32105 3' -61 NC_007016.1 + 130200 0.7 0.416334
Target:  5'- --gCGCGGCgCGGgGCGGcCGGGG-GCg -3'
miRNA:   3'- uuaGUGCCG-GUCaCGCCuGCCCCgCG- -5'
32105 3' -61 NC_007016.1 + 73243 0.7 0.39939
Target:  5'- --aCGCGGCCAGgGUacccGCGGGGUGCc -3'
miRNA:   3'- uuaGUGCCGGUCaCGcc--UGCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 104429 0.71 0.374818
Target:  5'- --cCugGGCCAGgcgcgcgGCGGcAUGGGGCu- -3'
miRNA:   3'- uuaGugCCGGUCa------CGCC-UGCCCCGcg -5'
32105 3' -61 NC_007016.1 + 119330 0.71 0.374818
Target:  5'- ---gACGG-CGGUGCaggugagagggGGGCGGGGUGCg -3'
miRNA:   3'- uuagUGCCgGUCACG-----------CCUGCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 21654 0.71 0.372417
Target:  5'- --cCGCGGUCAgaagcuGUGCGccaaucccggggacGACGGGGUGCg -3'
miRNA:   3'- uuaGUGCCGGU------CACGC--------------CUGCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 815 0.71 0.359014
Target:  5'- ---uGgGGCCGG-G-GGACGGGGCGUg -3'
miRNA:   3'- uuagUgCCGGUCaCgCCUGCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 129898 0.73 0.267909
Target:  5'- --gCcCGGCCGGcgGCGGcGCGGGGcCGCg -3'
miRNA:   3'- uuaGuGCCGGUCa-CGCC-UGCCCC-GCG- -5'
32105 3' -61 NC_007016.1 + 30883 0.74 0.221708
Target:  5'- ---gGCGGCC-GUGcCGGGCGGuGGUGCg -3'
miRNA:   3'- uuagUGCCGGuCAC-GCCUGCC-CCGCG- -5'
32105 3' -61 NC_007016.1 + 118856 0.76 0.17802
Target:  5'- uAUCGCGGCgGGcGCGG--GGGGCGCg -3'
miRNA:   3'- uUAGUGCCGgUCaCGCCugCCCCGCG- -5'
32105 3' -61 NC_007016.1 + 71137 1.08 0.000879
Target:  5'- gAAUCACGGCCAGUGCGGACGGGGCGCu -3'
miRNA:   3'- -UUAGUGCCGGUCACGCCUGCCCCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.