miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32105 5' -55.6 NC_007016.1 + 102198 0.66 0.895883
Target:  5'- gGCGCGaUCCAGUCgAacGCCGGggGUc -3'
miRNA:   3'- -CGCGC-GGGUCAGgUccUGGUCuuUAu -5'
32105 5' -55.6 NC_007016.1 + 116141 0.66 0.867228
Target:  5'- cGCGgGuCCCgAGcCCGGGAgCAGggGa- -3'
miRNA:   3'- -CGCgC-GGG-UCaGGUCCUgGUCuuUau -5'
32105 5' -55.6 NC_007016.1 + 42191 0.66 0.867228
Target:  5'- -gGCGCUgGGUCUGGGGaaccugugcuCCAGAGAUu -3'
miRNA:   3'- cgCGCGGgUCAGGUCCU----------GGUCUUUAu -5'
32105 5' -55.6 NC_007016.1 + 22768 0.66 0.859499
Target:  5'- aCGCGCCUGGacggcggCCAccuggcggcGGGCCAGAGAc- -3'
miRNA:   3'- cGCGCGGGUCa------GGU---------CCUGGUCUUUau -5'
32105 5' -55.6 NC_007016.1 + 122785 0.66 0.859499
Target:  5'- -gGCGCCC-GUCCGGuGACguGAu--- -3'
miRNA:   3'- cgCGCGGGuCAGGUC-CUGguCUuuau -5'
32105 5' -55.6 NC_007016.1 + 8997 0.67 0.851556
Target:  5'- uGCGaacgaaGCCCuGUCCGgauuGGACCGGGu--- -3'
miRNA:   3'- -CGCg-----CGGGuCAGGU----CCUGGUCUuuau -5'
32105 5' -55.6 NC_007016.1 + 13968 0.67 0.835053
Target:  5'- uGCGCcgugccacGCCCcGcCUAGcGGCCAGAGAUGc -3'
miRNA:   3'- -CGCG--------CGGGuCaGGUC-CUGGUCUUUAU- -5'
32105 5' -55.6 NC_007016.1 + 15039 0.69 0.738401
Target:  5'- uCGCGCCCugauaaccccccuGUCCcucgggcguuGGGACCGGGAGg- -3'
miRNA:   3'- cGCGCGGGu------------CAGG----------UCCUGGUCUUUau -5'
32105 5' -55.6 NC_007016.1 + 104416 0.71 0.629211
Target:  5'- gGCaCGCCCAGcgCCuGGGCCAGGc--- -3'
miRNA:   3'- -CGcGCGGGUCa-GGuCCUGGUCUuuau -5'
32105 5' -55.6 NC_007016.1 + 130170 0.72 0.577128
Target:  5'- cGCGgGCCCGGgCCggccgggcggAGGGCCGGGAGc- -3'
miRNA:   3'- -CGCgCGGGUCaGG----------UCCUGGUCUUUau -5'
32105 5' -55.6 NC_007016.1 + 104575 0.73 0.526055
Target:  5'- cGCGCGCCUGGcCCAGGcGCUGGgcGUGc -3'
miRNA:   3'- -CGCGCGGGUCaGGUCC-UGGUCuuUAU- -5'
32105 5' -55.6 NC_007016.1 + 107759 0.73 0.49623
Target:  5'- uGCGCGCCCAuUCCGGGGguugcccccCCAGGc--- -3'
miRNA:   3'- -CGCGCGGGUcAGGUCCU---------GGUCUuuau -5'
32105 5' -55.6 NC_007016.1 + 130065 0.73 0.486458
Target:  5'- cGCGCGCCgGGccgcuuucgguUCgCGGGGCCGGggGUc -3'
miRNA:   3'- -CGCGCGGgUC-----------AG-GUCCUGGUCuuUAu -5'
32105 5' -55.6 NC_007016.1 + 71101 1.09 0.002463
Target:  5'- gGCGCGCCCAGUCCAGGACCAGAAAUAa -3'
miRNA:   3'- -CGCGCGGGUCAGGUCCUGGUCUUUAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.