miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32106 3' -49.4 NC_007016.1 + 123110 0.66 0.996461
Target:  5'- -cCGGGUGGGCCAACGGcc-GGUaCCu -3'
miRNA:   3'- gaGUUUACCUGGUUGCUaacCCA-GGu -5'
32106 3' -49.4 NC_007016.1 + 86847 0.66 0.995832
Target:  5'- ------aGGACUAAUGAUUuaugcggacGGGUCCGg -3'
miRNA:   3'- gaguuuaCCUGGUUGCUAA---------CCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 62956 0.66 0.995114
Target:  5'- --gGAGUGG-CCGGCGGgguccuuggaGGGUCCGa -3'
miRNA:   3'- gagUUUACCuGGUUGCUaa--------CCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 72366 0.67 0.994298
Target:  5'- -cCAAAUGGAcCCAAUcGUU-GGUCCAu -3'
miRNA:   3'- gaGUUUACCU-GGUUGcUAAcCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 122745 0.67 0.993376
Target:  5'- --gGGGUGGaACCcACGGcUGGGUCUAc -3'
miRNA:   3'- gagUUUACC-UGGuUGCUaACCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 69598 0.67 0.992338
Target:  5'- aUCGGAUGG-CaCAAUG-UUGGGUUCGg -3'
miRNA:   3'- gAGUUUACCuG-GUUGCuAACCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 114663 0.67 0.991176
Target:  5'- uUCAGcgGGACUguaGGcUGGGUCCu -3'
miRNA:   3'- gAGUUuaCCUGGuugCUaACCCAGGu -5'
32106 3' -49.4 NC_007016.1 + 77893 0.68 0.98314
Target:  5'- aUCGGGUGGACCGG-GAUcagaGGGUCgGg -3'
miRNA:   3'- gAGUUUACCUGGUUgCUAa---CCCAGgU- -5'
32106 3' -49.4 NC_007016.1 + 59544 0.69 0.96635
Target:  5'- gUCGGAUGGACCAaacACGucgaacccaguccgGGGUUCAu -3'
miRNA:   3'- gAGUUUACCUGGU---UGCuaa-----------CCCAGGU- -5'
32106 3' -49.4 NC_007016.1 + 21484 0.7 0.960291
Target:  5'- ------gGGGCCAacGCGGUUGGGcCCGu -3'
miRNA:   3'- gaguuuaCCUGGU--UGCUAACCCaGGU- -5'
32106 3' -49.4 NC_007016.1 + 110119 0.7 0.952248
Target:  5'- uCUCAGAaccGGACCGGCGuccgggUGGGcggCCAg -3'
miRNA:   3'- -GAGUUUa--CCUGGUUGCua----ACCCa--GGU- -5'
32106 3' -49.4 NC_007016.1 + 72527 1.1 0.009729
Target:  5'- cCUCAAAUGGACCAACGAUUGGGUCCAu -3'
miRNA:   3'- -GAGUUUACCUGGUUGCUAACCCAGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.