miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32106 5' -58.3 NC_007016.1 + 104589 0.66 0.778262
Target:  5'- --gAGCCCCa-UGCCGCCgcgcgccuGGcCCAGGc -3'
miRNA:   3'- cagUCGGGGaaACGGCGG--------UCaGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 21345 0.66 0.729047
Target:  5'- cGUUGGCCCCgggggUcuuuuuagaaaccGCUGCCAGacUCCAGGc -3'
miRNA:   3'- -CAGUCGGGGaa---A-------------CGGCGGUC--AGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 8595 0.67 0.679667
Target:  5'- uGUCGGCCCU--UGCCGUCgaucugAGUCUGGu -3'
miRNA:   3'- -CAGUCGGGGaaACGGCGG------UCAGGUCu -5'
32106 5' -58.3 NC_007016.1 + 125170 0.67 0.679667
Target:  5'- ---uGCCCUUUUGCCGUC-GUCgGGGa -3'
miRNA:   3'- caguCGGGGAAACGGCGGuCAGgUCU- -5'
32106 5' -58.3 NC_007016.1 + 121080 0.67 0.679667
Target:  5'- -aCAGCUCgggugGCaCGCCGGUCCAGu -3'
miRNA:   3'- caGUCGGGgaaa-CG-GCGGUCAGGUCu -5'
32106 5' -58.3 NC_007016.1 + 78590 0.67 0.669438
Target:  5'- cUCaAGCCCCgcaguucUGCCGCUAccCCAGAa -3'
miRNA:   3'- cAG-UCGGGGaa-----ACGGCGGUcaGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 21869 0.68 0.648896
Target:  5'- -cCAGCCaCCUggcgcacgUGCCuCCcGUCCAGAu -3'
miRNA:   3'- caGUCGG-GGAa-------ACGGcGGuCAGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 48657 0.68 0.6386
Target:  5'- cUCGGUCCCUUcgGCCGUaacgCCAGAc -3'
miRNA:   3'- cAGUCGGGGAAa-CGGCGgucaGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 100801 0.68 0.618002
Target:  5'- --uGGCCauaCgaaaccgUGCCGCCGGUCCAaGAa -3'
miRNA:   3'- cagUCGGg--Gaa-----ACGGCGGUCAGGU-CU- -5'
32106 5' -58.3 NC_007016.1 + 130055 0.75 0.27595
Target:  5'- -gCGGCCCCgcgccGCCGCCGG-CCGGGc -3'
miRNA:   3'- caGUCGGGGaaa--CGGCGGUCaGGUCU- -5'
32106 5' -58.3 NC_007016.1 + 72485 1.08 0.001411
Target:  5'- gGUCAGCCCCUUUGCCGCCAGUCCAGAg -3'
miRNA:   3'- -CAGUCGGGGAAACGGCGGUCAGGUCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.