miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32107 5' -60.9 NC_007016.1 + 78453 0.66 0.601713
Target:  5'- cGGACgccucGguGGCCGGGGCGGucaugguGGAGg -3'
miRNA:   3'- -UCUGaucu-CguCCGGCCCUGCC-------CCUU- -5'
32107 5' -60.9 NC_007016.1 + 85863 0.66 0.591629
Target:  5'- -----cGAGCaAGGCCGGGGgcgucucUGGGGAGa -3'
miRNA:   3'- ucugauCUCG-UCCGGCCCU-------GCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 93432 0.67 0.582579
Target:  5'- uGGugUGGAGC---CCGGGAaGGGGGAu -3'
miRNA:   3'- -UCugAUCUCGuccGGCCCUgCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 21179 0.67 0.581575
Target:  5'- gAGACUccGGGGgAGacGCCGGGGgagacucCGGGGGAg -3'
miRNA:   3'- -UCUGA--UCUCgUC--CGGCCCU-------GCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 21227 0.67 0.581575
Target:  5'- gAGACUccGGGGgAGacGCCGGGGgagacucCGGGGGAg -3'
miRNA:   3'- -UCUGA--UCUCgUC--CGGCCCU-------GCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 114745 0.67 0.571556
Target:  5'- uAGGCUggcauacuauaauGGAGaaCAGGCUGGGAaccuuuguacCGGGGAu -3'
miRNA:   3'- -UCUGA-------------UCUC--GUCCGGCCCU----------GCCCCUu -5'
32107 5' -60.9 NC_007016.1 + 119843 0.68 0.514459
Target:  5'- cGGcACUAGAGaaCAGGCCGGGGggcgcagucgcgguaGGGGGc -3'
miRNA:   3'- -UC-UGAUCUC--GUCCGGCCCUg--------------CCCCUu -5'
32107 5' -60.9 NC_007016.1 + 91080 0.68 0.475529
Target:  5'- -cGCUggAGAGCAcGCUGaGGACGGGGGc -3'
miRNA:   3'- ucUGA--UCUCGUcCGGC-CCUGCCCCUu -5'
32107 5' -60.9 NC_007016.1 + 92718 0.69 0.447995
Target:  5'- cAG-UUGGAGCGGGCCGGuGCGcGGGc- -3'
miRNA:   3'- -UCuGAUCUCGUCCGGCCcUGC-CCCuu -5'
32107 5' -60.9 NC_007016.1 + 117531 0.69 0.439015
Target:  5'- gAGGCUAaacagcGcGCAGGCggccgccaccaGGGACGGGGAAa -3'
miRNA:   3'- -UCUGAU------CuCGUCCGg----------CCCUGCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 130168 0.71 0.325076
Target:  5'- cGGGCccGGGCcggccgggcggaGGGCCGGGAgcCGGGGGAg -3'
miRNA:   3'- -UCUGauCUCG------------UCCGGCCCU--GCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 751 0.76 0.166284
Target:  5'- gGGGCUgGGAGCauagacgcgGGGCUGGGaACGGGGAGu -3'
miRNA:   3'- -UCUGA-UCUCG---------UCCGGCCC-UGCCCCUU- -5'
32107 5' -60.9 NC_007016.1 + 90900 1.05 0.001352
Target:  5'- cAGACUAGAGCAGGCCGGGACGGGGAAu -3'
miRNA:   3'- -UCUGAUCUCGUCCGGCCCUGCCCCUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.