miRNA display CGI


Results 1 - 20 of 43 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32113 3' -56.6 NC_007016.1 + 19469 0.66 0.899196
Target:  5'- gCUCGGAcaagcGCCCccugguccggucaagAGAGGCGCGguuaccgGCCCa -3'
miRNA:   3'- gGGGCCU-----UGGG---------------UUUCUGUGCa------CGGGc -5'
32113 3' -56.6 NC_007016.1 + 107907 0.66 0.890046
Target:  5'- cCCCCGGAAU----GGGCGCGcacguuaauuucUGCCCc -3'
miRNA:   3'- -GGGGCCUUGgguuUCUGUGC------------ACGGGc -5'
32113 3' -56.6 NC_007016.1 + 48561 0.66 0.890046
Target:  5'- uUuuGGAucaaagagcagGCCCaAGAGAUuuACGUGUCCGg -3'
miRNA:   3'- gGggCCU-----------UGGG-UUUCUG--UGCACGGGC- -5'
32113 3' -56.6 NC_007016.1 + 130117 0.66 0.883242
Target:  5'- gCCCCgcucgGGGGCCCGGGGGCcgcGCGggagacccucGCCCc -3'
miRNA:   3'- -GGGG-----CCUUGGGUUUCUG---UGCa---------CGGGc -5'
32113 3' -56.6 NC_007016.1 + 129998 0.66 0.883242
Target:  5'- cCCCCGGcucccGGCCCuccgcccGGC-CG-GCCCGg -3'
miRNA:   3'- -GGGGCC-----UUGGGuuu----CUGuGCaCGGGC- -5'
32113 3' -56.6 NC_007016.1 + 130352 0.66 0.883242
Target:  5'- gCCCCGG-GCUCGgggggcgucGGGGCGCG-GCgCCGc -3'
miRNA:   3'- -GGGGCCuUGGGU---------UUCUGUGCaCG-GGC- -5'
32113 3' -56.6 NC_007016.1 + 129965 0.66 0.87622
Target:  5'- cCCCCGGGccCCCGAgcgGGGCGCcgccgGCCUc -3'
miRNA:   3'- -GGGGCCUu-GGGUU---UCUGUGca---CGGGc -5'
32113 3' -56.6 NC_007016.1 + 130360 0.66 0.875506
Target:  5'- gCCUCGGcggggccGGCCCcGGGGCGCGaccgaggGCCCc -3'
miRNA:   3'- -GGGGCC-------UUGGGuUUCUGUGCa------CGGGc -5'
32113 3' -56.6 NC_007016.1 + 121234 0.66 0.868983
Target:  5'- --aCGGGGCCCAGGGGC-CGcGCCg- -3'
miRNA:   3'- gggGCCUUGGGUUUCUGuGCaCGGgc -5'
32113 3' -56.6 NC_007016.1 + 78614 0.66 0.861537
Target:  5'- aCCCCaGaAGCCCGAGGGCACaa-CCUGc -3'
miRNA:   3'- -GGGGcC-UUGGGUUUCUGUGcacGGGC- -5'
32113 3' -56.6 NC_007016.1 + 114355 0.66 0.861537
Target:  5'- aCCCGGAgccACCCGGAGcCGCcaccccaCCCGg -3'
miRNA:   3'- gGGGCCU---UGGGUUUCuGUGcac----GGGC- -5'
32113 3' -56.6 NC_007016.1 + 114299 0.66 0.861537
Target:  5'- aCCCGGAgccACCCGGAGcCGCcaccccaCCCGg -3'
miRNA:   3'- gGGGCCU---UGGGUUUCuGUGcac----GGGC- -5'
32113 3' -56.6 NC_007016.1 + 5157 0.67 0.853889
Target:  5'- aCgCCGGAcaACCCcugGAAGAUAaucaggggucuCGUGCCCc -3'
miRNA:   3'- -GgGGCCU--UGGG---UUUCUGU-----------GCACGGGc -5'
32113 3' -56.6 NC_007016.1 + 115670 0.67 0.829785
Target:  5'- gCCCCaccGAGCCCAuuuccCACG-GCCCGc -3'
miRNA:   3'- -GGGGc--CUUGGGUuucu-GUGCaCGGGC- -5'
32113 3' -56.6 NC_007016.1 + 22787 0.67 0.829785
Target:  5'- aCCUGGcggcGGgCCAGAGACGCGaGCaCCGc -3'
miRNA:   3'- gGGGCC----UUgGGUUUCUGUGCaCG-GGC- -5'
32113 3' -56.6 NC_007016.1 + 130214 0.67 0.829785
Target:  5'- gCCCGGGGCCCcacAAGcCGCG-GCgCGc -3'
miRNA:   3'- gGGGCCUUGGGu--UUCuGUGCaCGgGC- -5'
32113 3' -56.6 NC_007016.1 + 101482 0.67 0.829785
Target:  5'- aUCgGGAAC----GGACGCGUGCCCu -3'
miRNA:   3'- gGGgCCUUGgguuUCUGUGCACGGGc -5'
32113 3' -56.6 NC_007016.1 + 22085 0.68 0.812821
Target:  5'- aCCCCGGGGgcgaCCGuaguuAGACAC--GCCCGu -3'
miRNA:   3'- -GGGGCCUUg---GGUu----UCUGUGcaCGGGC- -5'
32113 3' -56.6 NC_007016.1 + 64982 0.68 0.807603
Target:  5'- gUCCCGGGugCUAAggccgcggauucggcAGGCACG-GCUCa -3'
miRNA:   3'- -GGGGCCUugGGUU---------------UCUGUGCaCGGGc -5'
32113 3' -56.6 NC_007016.1 + 22162 0.68 0.804094
Target:  5'- uCUCgCGGGGCCCAAAGGgcccCGCGcGUCUGg -3'
miRNA:   3'- -GGG-GCCUUGGGUUUCU----GUGCaCGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.