miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32116 3' -50.9 NC_007016.1 + 30345 0.66 0.993443
Target:  5'- aGGG-CACGAAAAcuggucGGUGagGCCC-UGGc -3'
miRNA:   3'- gCCCaGUGCUUUU------CUACa-CGGGuACC- -5'
32116 3' -50.9 NC_007016.1 + 118704 0.66 0.993443
Target:  5'- gGGGUCugGGuuacaAAAGAUGacUCCGUGa -3'
miRNA:   3'- gCCCAGugCU-----UUUCUACacGGGUACc -5'
32116 3' -50.9 NC_007016.1 + 91888 0.66 0.992436
Target:  5'- gCGGaGUCAUGcgcGGGGUGUGCC--UGGc -3'
miRNA:   3'- -GCC-CAGUGCuu-UUCUACACGGguACC- -5'
32116 3' -50.9 NC_007016.1 + 122762 0.66 0.990054
Target:  5'- uGGGUCuaccaGCGAGGccAGGUGgcGCCCGUccGGu -3'
miRNA:   3'- gCCCAG-----UGCUUU--UCUACa-CGGGUA--CC- -5'
32116 3' -50.9 NC_007016.1 + 115621 0.67 0.985426
Target:  5'- gGGGUCGCGggGAGGUcacaccgaGCCgGgcgcgGGg -3'
miRNA:   3'- gCCCAGUGCuuUUCUAca------CGGgUa----CC- -5'
32116 3' -50.9 NC_007016.1 + 98332 0.67 0.983564
Target:  5'- uCGGGUaauuauaACGAAAcacaaGUGUCCGUGGa -3'
miRNA:   3'- -GCCCAg------UGCUUUucua-CACGGGUACC- -5'
32116 3' -50.9 NC_007016.1 + 28541 0.67 0.983564
Target:  5'- uGGGU-GCGAGAGGAUGgcgGCCa--GGc -3'
miRNA:   3'- gCCCAgUGCUUUUCUACa--CGGguaCC- -5'
32116 3' -50.9 NC_007016.1 + 72718 0.67 0.976898
Target:  5'- uGGGUUGCGGGAAGcGUG-GCCaCGUcGGu -3'
miRNA:   3'- gCCCAGUGCUUUUC-UACaCGG-GUA-CC- -5'
32116 3' -50.9 NC_007016.1 + 124079 0.67 0.976392
Target:  5'- cCGGGgaagguuacuagCACGAGGAGGUua-CCCGUGGc -3'
miRNA:   3'- -GCCCa-----------GUGCUUUUCUAcacGGGUACC- -5'
32116 3' -50.9 NC_007016.1 + 86224 0.68 0.974286
Target:  5'- -uGGUCACGGAGAcuUGUGguCCUGUGGg -3'
miRNA:   3'- gcCCAGUGCUUUUcuACAC--GGGUACC- -5'
32116 3' -50.9 NC_007016.1 + 42196 0.68 0.961324
Target:  5'- uGGGUCugGGGAAccUGUGCUCcagagauuccgcgGUGGa -3'
miRNA:   3'- gCCCAGugCUUUUcuACACGGG-------------UACC- -5'
32116 3' -50.9 NC_007016.1 + 76366 0.69 0.954
Target:  5'- uGGGUCcuucaGGAAAGcUGUGCggugCCGUGGa -3'
miRNA:   3'- gCCCAGug---CUUUUCuACACG----GGUACC- -5'
32116 3' -50.9 NC_007016.1 + 116796 0.69 0.945336
Target:  5'- cCGGGUCgggaagacaaaAUGggGGGAUGcGCaCAUGGg -3'
miRNA:   3'- -GCCCAG-----------UGCuuUUCUACaCGgGUACC- -5'
32116 3' -50.9 NC_007016.1 + 790 0.7 0.913253
Target:  5'- aGGGggAUGGGAAGggGUGCagaCGUGGg -3'
miRNA:   3'- gCCCagUGCUUUUCuaCACGg--GUACC- -5'
32116 3' -50.9 NC_007016.1 + 115948 0.71 0.907011
Target:  5'- gCGGGUCACcGAAAcAUGUaCUCAUGGg -3'
miRNA:   3'- -GCCCAGUGcUUUUcUACAcGGGUACC- -5'
32116 3' -50.9 NC_007016.1 + 70046 0.71 0.879548
Target:  5'- uGGGUggcguggauugCACGggGAcggucGGUGUGCCCAaccUGGc -3'
miRNA:   3'- gCCCA-----------GUGCuuUU-----CUACACGGGU---ACC- -5'
32116 3' -50.9 NC_007016.1 + 116021 1.11 0.00623
Target:  5'- gCGGGUCACGAAAAGAUGUGCCCAUGGu -3'
miRNA:   3'- -GCCCAGUGCUUUUCUACACGGGUACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.