miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32121 5' -59 NC_007016.1 + 71131 0.66 0.71749
Target:  5'- cGGCCagUGCGGACGgggCGCUcaggagGCGGCGc -3'
miRNA:   3'- -UCGGaaACGUCUGCg--GCGG------UGCCGUu -5'
32121 5' -59 NC_007016.1 + 116608 0.66 0.715479
Target:  5'- gGGUCguugggggagGCAGccGCGCCGCUugGCGGCGc -3'
miRNA:   3'- -UCGGaaa-------CGUC--UGCGGCGG--UGCCGUu -5'
32121 5' -59 NC_007016.1 + 120046 0.66 0.713464
Target:  5'- uGGCCgauauugggugGCAGuauguaauucACGCgCGCCGCGGCc- -3'
miRNA:   3'- -UCGGaaa--------CGUC----------UGCG-GCGGUGCCGuu -5'
32121 5' -59 NC_007016.1 + 10789 0.66 0.697255
Target:  5'- cGCgUgUGCAG-CGCCucgGCCAcCGGCGAa -3'
miRNA:   3'- uCGgAaACGUCuGCGG---CGGU-GCCGUU- -5'
32121 5' -59 NC_007016.1 + 20709 0.66 0.697255
Target:  5'- cGGCCguccGgGGcACG-CGCCGCGGCAAc -3'
miRNA:   3'- -UCGGaaa-CgUC-UGCgGCGGUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 846 0.66 0.687049
Target:  5'- uGCCgg-GCAGAUcuggGCCGCUugccCGGCGGu -3'
miRNA:   3'- uCGGaaaCGUCUG----CGGCGGu---GCCGUU- -5'
32121 5' -59 NC_007016.1 + 21969 0.66 0.683978
Target:  5'- gGGCCgcggGUauuaauGGACGCCGUcauccguggccaagCACGGCGAg -3'
miRNA:   3'- -UCGGaaa-CG------UCUGCGGCG--------------GUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 45225 0.66 0.666507
Target:  5'- gAGCUaaugGgGGACGCUGCCACGuccgcGCAAa -3'
miRNA:   3'- -UCGGaaa-CgUCUGCGGCGGUGC-----CGUU- -5'
32121 5' -59 NC_007016.1 + 120432 0.67 0.656189
Target:  5'- gGGCCgcgGCu--CaCCGCCGCGGCGGa -3'
miRNA:   3'- -UCGGaaaCGucuGcGGCGGUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 15766 0.67 0.656189
Target:  5'- cGGCUguugUGCAagcGAcCGCCGCaCGCGGUAu -3'
miRNA:   3'- -UCGGaa--ACGU---CU-GCGGCG-GUGCCGUu -5'
32121 5' -59 NC_007016.1 + 129901 0.67 0.656189
Target:  5'- cGGCCg--GCGGcgGCGCgggGCCGCGGCc- -3'
miRNA:   3'- -UCGGaaaCGUC--UGCGg--CGGUGCCGuu -5'
32121 5' -59 NC_007016.1 + 130031 0.67 0.645851
Target:  5'- gGGCCc--GCGGcCGCCGCCccCGGCc- -3'
miRNA:   3'- -UCGGaaaCGUCuGCGGCGGu-GCCGuu -5'
32121 5' -59 NC_007016.1 + 76480 0.67 0.645851
Target:  5'- uGGCUgaacGCGGACGgCGCacaUACGGCAAc -3'
miRNA:   3'- -UCGGaaa-CGUCUGCgGCG---GUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 101857 0.67 0.645851
Target:  5'- cGGCCgUUGCucGugGCCGUcgaaUugGGCGAu -3'
miRNA:   3'- -UCGGaAACGu-CugCGGCG----GugCCGUU- -5'
32121 5' -59 NC_007016.1 + 83228 0.67 0.645851
Target:  5'- cGCCUUauuguauaGguGugGaCUGCCAUGGCGAu -3'
miRNA:   3'- uCGGAAa-------CguCugC-GGCGGUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 57684 0.67 0.614804
Target:  5'- aAGCCUggUGCGGACGUgcaCGCCuaaauCGGgAAc -3'
miRNA:   3'- -UCGGAa-ACGUCUGCG---GCGGu----GCCgUU- -5'
32121 5' -59 NC_007016.1 + 111438 0.67 0.614804
Target:  5'- cGUCcgUGCAGucuaGCGUgGCCACGGCc- -3'
miRNA:   3'- uCGGaaACGUC----UGCGgCGGUGCCGuu -5'
32121 5' -59 NC_007016.1 + 119829 0.67 0.614804
Target:  5'- aGGCCg--GgGGGCGCaGUCGCGGUAGg -3'
miRNA:   3'- -UCGGaaaCgUCUGCGgCGGUGCCGUU- -5'
32121 5' -59 NC_007016.1 + 13453 0.67 0.614804
Target:  5'- gAGCCU--GCAGACGUCugGUgGCGGCu- -3'
miRNA:   3'- -UCGGAaaCGUCUGCGG--CGgUGCCGuu -5'
32121 5' -59 NC_007016.1 + 16414 0.67 0.604471
Target:  5'- uAGCCcgccUGCAGACGUUuaaggGCCACGGgGg -3'
miRNA:   3'- -UCGGaa--ACGUCUGCGG-----CGGUGCCgUu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.