miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32125 5' -58.9 NC_007016.1 + 29537 0.66 0.729286
Target:  5'- aUCGGACAc--GCAGGccGCGCUGUg- -3'
miRNA:   3'- aAGCCUGUccaCGUCCa-CGCGACGuc -5'
32125 5' -58.9 NC_007016.1 + 130995 0.66 0.729286
Target:  5'- --gGGGCAGccggccagcugcGUGCgAGG-GCGUUGCAGg -3'
miRNA:   3'- aagCCUGUC------------CACG-UCCaCGCGACGUC- -5'
32125 5' -58.9 NC_007016.1 + 64260 0.66 0.709233
Target:  5'- aUUUGG-CAuGGUGCcaaggacGGUGCGUUGCAa -3'
miRNA:   3'- -AAGCCuGU-CCACGu------CCACGCGACGUc -5'
32125 5' -58.9 NC_007016.1 + 609 0.66 0.699101
Target:  5'- gUgGGGCAGccggccagcugcGUGCgAGG-GCGUUGCAGg -3'
miRNA:   3'- aAgCCUGUC------------CACG-UCCaCGCGACGUC- -5'
32125 5' -58.9 NC_007016.1 + 114096 0.67 0.627079
Target:  5'- -cCGGugGGGUGCAGGUcccccggugGgGCUcCGGg -3'
miRNA:   3'- aaGCCugUCCACGUCCA---------CgCGAcGUC- -5'
32125 5' -58.9 NC_007016.1 + 125584 0.69 0.515169
Target:  5'- --aGGACAGGcgUGCcGGUGCGCgccagcugcugGCAGu -3'
miRNA:   3'- aagCCUGUCC--ACGuCCACGCGa----------CGUC- -5'
32125 5' -58.9 NC_007016.1 + 72739 0.71 0.386365
Target:  5'- gUgGGGCGGGaguugaGCGGGUGgGUUGCGGg -3'
miRNA:   3'- aAgCCUGUCCa-----CGUCCACgCGACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113792 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113527 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113565 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113603 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113641 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113679 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 114058 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 114020 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113982 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113944 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113717 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113868 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5'
32125 5' -58.9 NC_007016.1 + 113830 0.72 0.353642
Target:  5'- -cCGGugGGGUGCAggucccccGGUGgGgUGCAGg -3'
miRNA:   3'- aaGCCugUCCACGU--------CCACgCgACGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.