Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 22796 | 0.78 | 0.156284 |
Target: 5'- cGGGCCAgagacGCGAGCAccgcgagcGGCCGGCAGGUGGc -3' miRNA: 3'- -UCCGGU-----CGUUCGU--------CCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 317 | 0.77 | 0.181052 |
Target: 5'- nGGCCAGCAAGCAGGCCuacugucccucuaaAGacccucAGCAGc -3' miRNA: 3'- uCCGGUCGUUCGUCCGG--------------UCgu----UCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130174 | 0.77 | 0.182447 |
Target: 5'- cGGCC-GCGGGCccGGGCCGGcCGGGCGGa -3' miRNA: 3'- uCCGGuCGUUCG--UCCGGUC-GUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 76819 | 0.75 | 0.217799 |
Target: 5'- cGGGUcgCAGCGgcGGCGGcGCCGGCAGGCAc -3' miRNA: 3'- -UCCG--GUCGU--UCGUC-CGGUCGUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 1714 | 0.73 | 0.305998 |
Target: 5'- uGGCCGuagauguuccGC-GGCAGGUUAGCAAGUAGg -3' miRNA: 3'- uCCGGU----------CGuUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 20844 | 0.73 | 0.320626 |
Target: 5'- cGGCCgcGGCGAGCAcGGCgAGCu-GCAGu -3' miRNA: 3'- uCCGG--UCGUUCGU-CCGgUCGuuCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 26243 | 0.71 | 0.410219 |
Target: 5'- aAGGCCGGCGugguGGCucGCCGGCuguggGGGCGGc -3' miRNA: 3'- -UCCGGUCGU----UCGucCGGUCG-----UUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 96491 | 0.7 | 0.428104 |
Target: 5'- uGGCCGGUgaccAGGCgacGGGCCAGUucgucGGCGGg -3' miRNA: 3'- uCCGGUCG----UUCG---UCCGGUCGu----UCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 129885 | 0.7 | 0.465208 |
Target: 5'- gGGGCCccCAGGCGcccGGCCGGC-GGCGGc -3' miRNA: 3'- -UCCGGucGUUCGU---CCGGUCGuUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 126222 | 0.69 | 0.484377 |
Target: 5'- uGGCgCAGUAGGUcuGGGCCAuaGGGUAGg -3' miRNA: 3'- uCCG-GUCGUUCG--UCCGGUcgUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 73698 | 0.69 | 0.494102 |
Target: 5'- uGGCCcGCcgccuGGGCGucuGGCgGGCAGGCAGa -3' miRNA: 3'- uCCGGuCG-----UUCGU---CCGgUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 26247 | 0.69 | 0.494102 |
Target: 5'- cGGGCCccGguGG-AGGCCAGCGuGCAGc -3' miRNA: 3'- -UCCGGu-CguUCgUCCGGUCGUuCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 63131 | 0.69 | 0.523788 |
Target: 5'- cGGCCAGgGAgaaccGguGGCCGcGUGAGCGGc -3' miRNA: 3'- uCCGGUCgUU-----CguCCGGU-CGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 45159 | 0.69 | 0.523788 |
Target: 5'- uAGGCCGGgAuauGCAGGCggUAGCAcgGGCAc -3' miRNA: 3'- -UCCGGUCgUu--CGUCCG--GUCGU--UCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 116136 | 0.68 | 0.574648 |
Target: 5'- uGGCCgGGCAgaGGCcGGCCGGCcaAAGguGc -3' miRNA: 3'- uCCGG-UCGU--UCGuCCGGUCG--UUCguC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130279 | 0.68 | 0.584973 |
Target: 5'- gGGGcCCGGCgGAGCGGGaCCcGgGGGCGGc -3' miRNA: 3'- -UCC-GGUCG-UUCGUCC-GGuCgUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130146 | 0.68 | 0.584973 |
Target: 5'- aGGGCCGGgAgccggGGgAGGCCGGC-GGCGc -3' miRNA: 3'- -UCCGGUCgU-----UCgUCCGGUCGuUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 21470 | 0.68 | 0.595334 |
Target: 5'- uGGGCCcGUAAcgcuugccGCGGGCCGcuggaauuGCAAGCAa -3' miRNA: 3'- -UCCGGuCGUU--------CGUCCGGU--------CGUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 92463 | 0.68 | 0.595334 |
Target: 5'- aAGGCCgacGGUGAGCAGGCCG--AGGUAu -3' miRNA: 3'- -UCCGG---UCGUUCGUCCGGUcgUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 92719 | 0.67 | 0.616132 |
Target: 5'- ---aCAGUugGAGCGGGCCGGUgcGCGGg -3' miRNA: 3'- uccgGUCG--UUCGUCCGGUCGuuCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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