Results 1 - 20 of 52 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130981 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130945 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130909 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130873 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130837 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130801 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130765 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130729 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130704 | 1.07 | 0.001297 |
Target: 5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130630 | 0.81 | 0.094422 |
Target: 5'- -aGCaAGCGAGCAGGCCAGCAGGCc- -3' miRNA: 3'- ucCGgUCGUUCGUCCGGUCGUUCGuc -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130348 | 0.66 | 0.688874 |
Target: 5'- gGGGCCcggGGCGccucGGCgGGGCCGGCcccgGGGCGc -3' miRNA: 3'- -UCCGG---UCGU----UCG-UCCGGUCG----UUCGUc -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130279 | 0.68 | 0.584973 |
Target: 5'- gGGGcCCGGCgGAGCGGGaCCcGgGGGCGGc -3' miRNA: 3'- -UCC-GGUCG-UUCGUCC-GGuCgUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130174 | 0.77 | 0.182447 |
Target: 5'- cGGCC-GCGGGCccGGGCCGGcCGGGCGGa -3' miRNA: 3'- uCCGGuCGUUCG--UCCGGUC-GUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 130146 | 0.68 | 0.584973 |
Target: 5'- aGGGCCGGgAgccggGGgAGGCCGGC-GGCGc -3' miRNA: 3'- -UCCGGUCgU-----UCgUCCGGUCGuUCGUc -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 129885 | 0.7 | 0.465208 |
Target: 5'- gGGGCCccCAGGCGcccGGCCGGC-GGCGGc -3' miRNA: 3'- -UCCGGucGUUCGU---CCGGUCGuUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 126222 | 0.69 | 0.484377 |
Target: 5'- uGGCgCAGUAGGUcuGGGCCAuaGGGUAGg -3' miRNA: 3'- uCCG-GUCGUUCG--UCCGGUcgUUCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 125588 | 0.66 | 0.668198 |
Target: 5'- cAGGCguGCcgguGCGcGCCAGCugcuGGCAGu -3' miRNA: 3'- -UCCGguCGuu--CGUcCGGUCGu---UCGUC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 116136 | 0.68 | 0.574648 |
Target: 5'- uGGCCgGGCAgaGGCcGGCCGGCcaAAGguGc -3' miRNA: 3'- uCCGG-UCGU--UCGuCCGGUCG--UUCguC- -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 107271 | 0.66 | 0.709354 |
Target: 5'- uGGcGCCAGUucucgcAGCgAGGCCAGCAGucccGCGu -3' miRNA: 3'- -UC-CGGUCGu-----UCG-UCCGGUCGUU----CGUc -5' |
|||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 105469 | 0.67 | 0.636979 |
Target: 5'- gAGGCUaugcuGGCGugugcggguuuGGCGGGCuCGGUGAGCAc -3' miRNA: 3'- -UCCGG-----UCGU-----------UCGUCCG-GUCGUUCGUc -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home