miRNA display CGI


Results 21 - 40 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32128 5' -58.8 NC_007016.1 + 20844 0.73 0.320626
Target:  5'- cGGCCgcGGCGAGCAcGGCgAGCu-GCAGu -3'
miRNA:   3'- uCCGG--UCGUUCGU-CCGgUCGuuCGUC- -5'
32128 5' -58.8 NC_007016.1 + 96491 0.7 0.428104
Target:  5'- uGGCCGGUgaccAGGCgacGGGCCAGUucgucGGCGGg -3'
miRNA:   3'- uCCGGUCG----UUCG---UCCGGUCGu----UCGUC- -5'
32128 5' -58.8 NC_007016.1 + 26247 0.69 0.494102
Target:  5'- cGGGCCccGguGG-AGGCCAGCGuGCAGc -3'
miRNA:   3'- -UCCGGu-CguUCgUCCGGUCGUuCGUC- -5'
32128 5' -58.8 NC_007016.1 + 73698 0.69 0.494102
Target:  5'- uGGCCcGCcgccuGGGCGucuGGCgGGCAGGCAGa -3'
miRNA:   3'- uCCGGuCG-----UUCGU---CCGgUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130146 0.68 0.584973
Target:  5'- aGGGCCGGgAgccggGGgAGGCCGGC-GGCGc -3'
miRNA:   3'- -UCCGGUCgU-----UCgUCCGGUCGuUCGUc -5'
32128 5' -58.8 NC_007016.1 + 130704 1.07 0.001297
Target:  5'- nGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- uCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 342 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 378 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130945 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130909 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130873 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130837 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130801 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130765 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 130729 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 594 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 558 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 522 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 475 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5'
32128 5' -58.8 NC_007016.1 + 439 1.09 0.000923
Target:  5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3'
miRNA:   3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.