Results 21 - 40 of 52 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32128 | 5' | -58.8 | NC_007016.1 | + | 594 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130729 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 92463 | 0.68 | 0.595334 |
Target: 5'- aAGGCCgacGGUGAGCAGGCCG--AGGUAu -3' miRNA: 3'- -UCCGG---UCGUUCGUCCGGUcgUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 10332 | 0.67 | 0.65573 |
Target: 5'- uGGGCCAGCAcgacguuGGCGGGgCCGGgAaagagaucgcucuGGCGc -3' miRNA: 3'- -UCCGGUCGU-------UCGUCC-GGUCgU-------------UCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 21470 | 0.68 | 0.595334 |
Target: 5'- uGGGCCcGUAAcgcuugccGCGGGCCGcuggaauuGCAAGCAa -3' miRNA: 3'- -UCCGGuCGUU--------CGUCCGGU--------CGUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 8596 | 0.67 | 0.636979 |
Target: 5'- gGGGUCGGUAgcuguuccucGGgGGGCUGGCAggaAGCGGu -3' miRNA: 3'- -UCCGGUCGU----------UCgUCCGGUCGU---UCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 22012 | 0.66 | 0.677522 |
Target: 5'- -cGCCAGguGGCuGGCCAcGCcugguuuccgucgAGGCGGa -3' miRNA: 3'- ucCGGUCguUCGuCCGGU-CG-------------UUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 92719 | 0.67 | 0.616132 |
Target: 5'- ---aCAGUugGAGCGGGCCGGUgcGCGGg -3' miRNA: 3'- uccgGUCG--UUCGUCCGGUCGuuCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 13267 | 0.67 | 0.626553 |
Target: 5'- uGGCCGcGCGgcucuGGCGGGC-GGCAAGUAc -3' miRNA: 3'- uCCGGU-CGU-----UCGUCCGgUCGUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 105469 | 0.67 | 0.636979 |
Target: 5'- gAGGCUaugcuGGCGugugcggguuuGGCGGGCuCGGUGAGCAc -3' miRNA: 3'- -UCCGG-----UCGU-----------UCGUCCG-GUCGUUCGUc -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 68046 | 0.67 | 0.647401 |
Target: 5'- cGGGCCGGgGGccGCGgauguugaaccGGCCAGCGuGGCGGc -3' miRNA: 3'- -UCCGGUCgUU--CGU-----------CCGGUCGU-UCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 91985 | 0.66 | 0.709354 |
Target: 5'- aAGGCCAcCAcGCGGGCCGaaAAGguGc -3' miRNA: 3'- -UCCGGUcGUuCGUCCGGUcgUUCguC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130765 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130801 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130837 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130873 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130909 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130945 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130981 | 1.09 | 0.000923 |
Target: 5'- cAGGCCAGCAAGCAGGCCAGCAAGCAGg -3' miRNA: 3'- -UCCGGUCGUUCGUCCGGUCGUUCGUC- -5' |
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32128 | 5' | -58.8 | NC_007016.1 | + | 130279 | 0.68 | 0.584973 |
Target: 5'- gGGGcCCGGCgGAGCGGGaCCcGgGGGCGGc -3' miRNA: 3'- -UCC-GGUCG-UUCGUCC-GGuCgUUCGUC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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