miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32131 3' -57.6 NC_007016.1 + 43521 0.66 0.778382
Target:  5'- ---gGCUGGcCCUGUUaaagGC-GGCCUGg -3'
miRNA:   3'- cgaaCGACC-GGACGAa---CGaCCGGACg -5'
32131 3' -57.6 NC_007016.1 + 85874 0.66 0.768852
Target:  5'- aCUUGCaagacacgguugUGGCgUGCccgUGCUaccGCCUGCa -3'
miRNA:   3'- cGAACG------------ACCGgACGa--ACGAc--CGGACG- -5'
32131 3' -57.6 NC_007016.1 + 38768 0.66 0.768852
Target:  5'- ---aGCaGGCCgagGUaUGuCUGGCCUGUc -3'
miRNA:   3'- cgaaCGaCCGGa--CGaAC-GACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 91076 0.67 0.739541
Target:  5'- ---cGCUGGCCUGC--GUcccaccaccucgUGGCCaGCa -3'
miRNA:   3'- cgaaCGACCGGACGaaCG------------ACCGGaCG- -5'
32131 3' -57.6 NC_007016.1 + 467 0.68 0.651567
Target:  5'- uGCUUGCUgcugaggggacaguaGGgCUGCcUGCUuGCUUGCu -3'
miRNA:   3'- -CGAACGA---------------CCgGACGaACGAcCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 537 0.68 0.651567
Target:  5'- uGCUUGCUgcugaggggacaguaGGgCUGCcUGCUuGCUUGCu -3'
miRNA:   3'- -CGAACGA---------------CCgGACGaACGAcCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130888 0.68 0.651567
Target:  5'- uGCUUGCUgcugaggggacaguaGGgCUGCcUGCUuGCUUGCu -3'
miRNA:   3'- -CGAACGA---------------CCgGACGaACGAcCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 101 0.78 0.191996
Target:  5'- gGCcUGCUGGCCUGCUcgcuUGCUugguaGCUUGCa -3'
miRNA:   3'- -CGaACGACCGGACGA----ACGAc----CGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130477 0.78 0.191996
Target:  5'- gGCcUGCUGGCCUGCUcgcuUGCUugguaGCUUGCa -3'
miRNA:   3'- -CGaACGACCGGACGA----ACGAc----CGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130719 0.8 0.133562
Target:  5'- nCUUGCUGGCCUGCUUGCUG-CCn-- -3'
miRNA:   3'- cGAACGACCGGACGAACGACcGGacg -5'
32131 3' -57.6 NC_007016.1 + 130838 0.84 0.076016
Target:  5'- nCUUGCUGGCCUGCUUGCUuG-CUGCu -3'
miRNA:   3'- cGAACGACCGGACGAACGAcCgGACG- -5'
32131 3' -57.6 NC_007016.1 + 235 0.86 0.054714
Target:  5'- nCUUGCUGGCCUGCuUUGCUGGCCn-- -3'
miRNA:   3'- cGAACGACCGGACG-AACGACCGGacg -5'
32131 3' -57.6 NC_007016.1 + 130586 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 259 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 367 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130777 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130741 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130694 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 130658 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5'
32131 3' -57.6 NC_007016.1 + 403 1.13 0.000715
Target:  5'- uGCUUGCUGGCCUGCUUGCUGGCCUGCu -3'
miRNA:   3'- -CGAACGACCGGACGAACGACCGGACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.