miRNA display CGI


Results 1 - 20 of 23 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32131 5' -60.2 NC_007016.1 + 23759 0.66 0.585605
Target:  5'- -aGCgUGGCCUgggcccuucggacGCgggacUGCUGGCCUcGCUg -3'
miRNA:   3'- aaCG-ACCGGA-------------CGa----ACGACCGGA-CGAa -5'
32131 5' -60.2 NC_007016.1 + 43521 0.66 0.565806
Target:  5'- -gGCUGGcCCUGUUaaagGC-GGCCUGgCUUg -3'
miRNA:   3'- aaCGACC-GGACGAa---CGaCCGGAC-GAA- -5'
32131 5' -60.2 NC_007016.1 + 104 0.72 0.238859
Target:  5'- cUGCUGGCCUGCUcgcuUGCUugguaGCUUGCa- -3'
miRNA:   3'- aACGACCGGACGA----ACGAc----CGGACGaa -5'
32131 5' -60.2 NC_007016.1 + 130480 0.72 0.238859
Target:  5'- cUGCUGGCCUGCUcgcuUGCUugguaGCUUGCa- -3'
miRNA:   3'- aACGACCGGACGA----ACGAc----CGGACGaa -5'
32131 5' -60.2 NC_007016.1 + 130840 0.79 0.083113
Target:  5'- nUGCUGGCCUGCUUGCUuG-CUGCUg -3'
miRNA:   3'- aACGACCGGACGAACGAcCgGACGAa -5'
32131 5' -60.2 NC_007016.1 + 454 0.79 0.083113
Target:  5'- nUGCUGGCCUGCUUGCUuG-CUGCUg -3'
miRNA:   3'- aACGACCGGACGAACGAcCgGACGAa -5'
32131 5' -60.2 NC_007016.1 + 130721 0.79 0.078672
Target:  5'- nUGCUGGCCUGCUUGCUG-CCUGn-- -3'
miRNA:   3'- aACGACCGGACGAACGACcGGACgaa -5'
32131 5' -60.2 NC_007016.1 + 321 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 212 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130815 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130779 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130743 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130696 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130660 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 285 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130588 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 130552 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 429 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 393 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5'
32131 5' -60.2 NC_007016.1 + 357 1.03 0.001401
Target:  5'- cUUGCUGGCCUGCUUGCUGGCCUGCUUg -3'
miRNA:   3'- -AACGACCGGACGAACGACCGGACGAA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.