miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32143 3' -52.5 NC_007016.1 + 11083 0.66 0.979938
Target:  5'- cGUGCGGugcUCUCUgCGGuuUACGgCGCu -3'
miRNA:   3'- -CGCGCCu--AGAGGgGCUuuAUGCaGUG- -5'
32143 3' -52.5 NC_007016.1 + 46018 0.66 0.979938
Target:  5'- uGCGUGGAUUUUCCUGugcc-CGUCuACu -3'
miRNA:   3'- -CGCGCCUAGAGGGGCuuuauGCAG-UG- -5'
32143 3' -52.5 NC_007016.1 + 85893 0.66 0.977607
Target:  5'- -gGUGGAUCUguUCCaCGGAAUACGUa-- -3'
miRNA:   3'- cgCGCCUAGA--GGG-GCUUUAUGCAgug -5'
32143 3' -52.5 NC_007016.1 + 90484 0.66 0.972355
Target:  5'- uGCGCGGGg--UCCCGc--UGgGUCACg -3'
miRNA:   3'- -CGCGCCUagaGGGGCuuuAUgCAGUG- -5'
32143 3' -52.5 NC_007016.1 + 16435 0.66 0.968498
Target:  5'- -gGCGGGUCugagguauggggaaUCCCCGAAuagacCGuUCACa -3'
miRNA:   3'- cgCGCCUAG--------------AGGGGCUUuau--GC-AGUG- -5'
32143 3' -52.5 NC_007016.1 + 83769 0.68 0.942512
Target:  5'- uGCGCGGuuccaccguAUUUCCCUGAAAccacACGUUAg -3'
miRNA:   3'- -CGCGCC---------UAGAGGGGCUUUa---UGCAGUg -5'
32143 3' -52.5 NC_007016.1 + 60312 0.68 0.921777
Target:  5'- gGCGCGGGUCUgacacguaCgCCCGAGGUcccGCGcagCGCc -3'
miRNA:   3'- -CGCGCCUAGA--------G-GGGCUUUA---UGCa--GUG- -5'
32143 3' -52.5 NC_007016.1 + 31084 0.69 0.915965
Target:  5'- -gGCGGAcggUCCCCGGGccuGUGCGUCu- -3'
miRNA:   3'- cgCGCCUag-AGGGGCUU---UAUGCAGug -5'
32143 3' -52.5 NC_007016.1 + 115572 0.69 0.89704
Target:  5'- -aGCGGAaacggCUUCCgCGGAGUAacCGUCGCa -3'
miRNA:   3'- cgCGCCUa----GAGGG-GCUUUAU--GCAGUG- -5'
32143 3' -52.5 NC_007016.1 + 17487 0.72 0.757292
Target:  5'- aCGCGuucacaaucccggucGGUCUCCCCGggGUGgucucggcggagUGUCACg -3'
miRNA:   3'- cGCGC---------------CUAGAGGGGCuuUAU------------GCAGUG- -5'
32143 3' -52.5 NC_007016.1 + 9050 0.75 0.628882
Target:  5'- uGCGgGGuAUCUCCCCcaucccgcacccaGAccuAUACGUCACg -3'
miRNA:   3'- -CGCgCC-UAGAGGGG-------------CUu--UAUGCAGUG- -5'
32143 3' -52.5 NC_007016.1 + 16952 1.01 0.019764
Target:  5'- cGCGCGGAUCUCCCC-AAAUACGUCACg -3'
miRNA:   3'- -CGCGCCUAGAGGGGcUUUAUGCAGUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.