miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32143 5' -52.5 NC_007016.1 + 121783 0.66 0.978181
Target:  5'- aGGaccgGACGccgugCUGCGuGGCGUCCGa-- -3'
miRNA:   3'- cCCa---UUGCa----GACGUuCCGCAGGCaag -5'
32143 5' -52.5 NC_007016.1 + 40347 0.66 0.978181
Target:  5'- cGGccACGUCUGCGgcauGGGCGUCg---- -3'
miRNA:   3'- cCCauUGCAGACGU----UCCGCAGgcaag -5'
32143 5' -52.5 NC_007016.1 + 38387 0.66 0.975694
Target:  5'- cGGGUGAC--CUGCGAacGGUGcgCCGUUa -3'
miRNA:   3'- -CCCAUUGcaGACGUU--CCGCa-GGCAAg -5'
32143 5' -52.5 NC_007016.1 + 119153 0.66 0.973006
Target:  5'- -uGUGGCG-CUGCGAGGUccucggCCGUUUg -3'
miRNA:   3'- ccCAUUGCaGACGUUCCGca----GGCAAG- -5'
32143 5' -52.5 NC_007016.1 + 60667 0.67 0.96366
Target:  5'- ---cGugGUgUGCGAGGUGUUCGUg- -3'
miRNA:   3'- cccaUugCAgACGUUCCGCAGGCAag -5'
32143 5' -52.5 NC_007016.1 + 26310 0.67 0.960096
Target:  5'- uGGGcca-GUCUGUggGGUaugGUCCGggCa -3'
miRNA:   3'- -CCCauugCAGACGuuCCG---CAGGCaaG- -5'
32143 5' -52.5 NC_007016.1 + 52470 0.67 0.956299
Target:  5'- gGGGUAGCGgcagaaCUGCGGGGCuugagGUUucggaUGUUCa -3'
miRNA:   3'- -CCCAUUGCa-----GACGUUCCG-----CAG-----GCAAG- -5'
32143 5' -52.5 NC_007016.1 + 26310 0.68 0.917058
Target:  5'- uGGUA-CGgCUGUGAGGCGuggagaugggugUCCGUUCc -3'
miRNA:   3'- cCCAUuGCaGACGUUCCGC------------AGGCAAG- -5'
32143 5' -52.5 NC_007016.1 + 876 0.69 0.898197
Target:  5'- cGGGggGCGUCgggGCGcGGCGccgCCGggCu -3'
miRNA:   3'- -CCCauUGCAGa--CGUuCCGCa--GGCaaG- -5'
32143 5' -52.5 NC_007016.1 + 124368 0.71 0.828945
Target:  5'- uGGGUGcuCGUCgGCAGGGUuUCCGUccUCc -3'
miRNA:   3'- -CCCAUu-GCAGaCGUUCCGcAGGCA--AG- -5'
32143 5' -52.5 NC_007016.1 + 35962 0.72 0.77397
Target:  5'- aGGUGACGUCUGCGuuaaaGGGCGa-CGUagUCg -3'
miRNA:   3'- cCCAUUGCAGACGU-----UCCGCagGCA--AG- -5'
32143 5' -52.5 NC_007016.1 + 90059 0.73 0.714177
Target:  5'- cGGGUugAACGUUgcGCGAGGCGUCUugGUUUu -3'
miRNA:   3'- -CCCA--UUGCAGa-CGUUCCGCAGG--CAAG- -5'
32143 5' -52.5 NC_007016.1 + 89619 0.75 0.609607
Target:  5'- aGGUAACGUCUGCAGugacuGGCGUCa---- -3'
miRNA:   3'- cCCAUUGCAGACGUU-----CCGCAGgcaag -5'
32143 5' -52.5 NC_007016.1 + 9935 0.82 0.265066
Target:  5'- gGGGggGCGUCgcauacgGCGAGGCGUCCGa-- -3'
miRNA:   3'- -CCCauUGCAGa------CGUUCCGCAGGCaag -5'
32143 5' -52.5 NC_007016.1 + 16992 1.13 0.003152
Target:  5'- gGGGUAACGUCUGCAAGGCGUCCGUUCa -3'
miRNA:   3'- -CCCAUUGCAGACGUUCCGCAGGCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.