miRNA display CGI


Results 1 - 20 of 31 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32148 5' -48.1 NC_007016.1 + 48952 0.66 0.999051
Target:  5'- cCAGAGAGCCauGCGccgUGCAAc-GGGGCa -3'
miRNA:   3'- -GUUUCUUGG--CGCa--GUGUUuuUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 79976 0.66 0.999051
Target:  5'- ---cGAGCCGCGUC-CGAGcacGGCg -3'
miRNA:   3'- guuuCUUGGCGCAGuGUUUuucCCGa -5'
32148 5' -48.1 NC_007016.1 + 724 0.66 0.999051
Target:  5'- -cGGGGAgaGCGg-ACGGAAAGGGCg -3'
miRNA:   3'- guUUCUUggCGCagUGUUUUUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 15136 0.66 0.999051
Target:  5'- gGAAGAcugcuaACCGUGUgGCuagaaaagcGAAGGGCg -3'
miRNA:   3'- gUUUCU------UGGCGCAgUGuu-------UUUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 29773 0.66 0.999051
Target:  5'- gCGAGGAGaCgCGCGUCGguCAGGGAagauGGGCUc -3'
miRNA:   3'- -GUUUCUU-G-GCGCAGU--GUUUUU----CCCGA- -5'
32148 5' -48.1 NC_007016.1 + 15316 0.66 0.998835
Target:  5'- gCGGAG-ACCGUGaCGCuccGGGGGCg -3'
miRNA:   3'- -GUUUCuUGGCGCaGUGuuuUUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 14290 0.66 0.99792
Target:  5'- --cGGuGCCG-GUCGCcaaGAGGGGGGCUg -3'
miRNA:   3'- guuUCuUGGCgCAGUG---UUUUUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 35253 0.67 0.997024
Target:  5'- ----aAACCGgGUCACGGu--GGGCa -3'
miRNA:   3'- guuucUUGGCgCAGUGUUuuuCCCGa -5'
32148 5' -48.1 NC_007016.1 + 11113 0.67 0.996971
Target:  5'- aCAGGGAcuucacuaaccagACCGUGUUccuGCAAccggucGAGGGGCUc -3'
miRNA:   3'- -GUUUCU-------------UGGCGCAG---UGUU------UUUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 124736 0.67 0.996467
Target:  5'- aCGAAGAACCauCGagGCGuuuGAGGGCa -3'
miRNA:   3'- -GUUUCUUGGc-GCagUGUuu-UUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 33635 0.67 0.995828
Target:  5'- --cAGGGCCaacgaGCGUCugAu-AGGGGCUa -3'
miRNA:   3'- guuUCUUGG-----CGCAGugUuuUUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 126490 0.67 0.995828
Target:  5'- -uAAGGGCCGCGgcggCcCAGcGAGGGUUc -3'
miRNA:   3'- guUUCUUGGCGCa---GuGUUuUUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 839 0.68 0.994265
Target:  5'- -cGGGAGCCGCGcgcCGCGGcuuguGGGGCc -3'
miRNA:   3'- guUUCUUGGCGCa--GUGUUuu---UCCCGa -5'
32148 5' -48.1 NC_007016.1 + 112392 0.69 0.986614
Target:  5'- ---cGAACCGCGgcgcgaaCACAAAGAuGGCUc -3'
miRNA:   3'- guuuCUUGGCGCa------GUGUUUUUcCCGA- -5'
32148 5' -48.1 NC_007016.1 + 22173 0.69 0.986614
Target:  5'- cCAAAGGGCCcCG-CGCGucuGGGGGCg -3'
miRNA:   3'- -GUUUCUUGGcGCaGUGUuu-UUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 11393 0.69 0.986614
Target:  5'- -cGGGGGgCGCaGUCGCGGuAGGGGGCg -3'
miRNA:   3'- guUUCUUgGCG-CAGUGUU-UUUCCCGa -5'
32148 5' -48.1 NC_007016.1 + 71587 0.69 0.98644
Target:  5'- gAGGGAGCCGCGgaggggguuguagUCACAGGAGGcGuGCc -3'
miRNA:   3'- gUUUCUUGGCGC-------------AGUGUUUUUC-C-CGa -5'
32148 5' -48.1 NC_007016.1 + 71923 0.7 0.980618
Target:  5'- gGGAGAACCGCugGUCguGCcccuGGGGCUa -3'
miRNA:   3'- gUUUCUUGGCG--CAG--UGuuuuUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 130314 0.7 0.975632
Target:  5'- gAAAGGuggucuCCGCGcCGCcggGAGGGGGGCUg -3'
miRNA:   3'- gUUUCUu-----GGCGCaGUG---UUUUUCCCGA- -5'
32148 5' -48.1 NC_007016.1 + 6592 0.7 0.972815
Target:  5'- aCGGAGAACagGCG-UACAAGAuGGGCa -3'
miRNA:   3'- -GUUUCUUGg-CGCaGUGUUUUuCCCGa -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.