miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32149 3' -48.3 NC_007016.1 + 117514 0.66 0.998284
Target:  5'- ----cUGGAAGCGGCUCGguaccUCGGc-- -3'
miRNA:   3'- uuucuGCCUUUGCCGAGCa----AGCUuuu -5'
32149 3' -48.3 NC_007016.1 + 118323 0.66 0.998284
Target:  5'- ---cGCGGAAGCGGCU-GUUCa---- -3'
miRNA:   3'- uuucUGCCUUUGCCGAgCAAGcuuuu -5'
32149 3' -48.3 NC_007016.1 + 86459 0.66 0.997928
Target:  5'- --cGugGGAcACGGCUCGccuucCGGAGu -3'
miRNA:   3'- uuuCugCCUuUGCCGAGCaa---GCUUUu -5'
32149 3' -48.3 NC_007016.1 + 35964 0.67 0.995827
Target:  5'- cAAGGCGG--GCGGCUCGgUUCa---- -3'
miRNA:   3'- uUUCUGCCuuUGCCGAGC-AAGcuuuu -5'
32149 3' -48.3 NC_007016.1 + 123255 0.67 0.995091
Target:  5'- uGAGGGCGGu-GCGGCcgCGUauuUCGGAc- -3'
miRNA:   3'- -UUUCUGCCuuUGCCGa-GCA---AGCUUuu -5'
32149 3' -48.3 NC_007016.1 + 60073 0.67 0.995091
Target:  5'- cAGAGGCGGAAucACGGCcagugCGgaCGggGc -3'
miRNA:   3'- -UUUCUGCCUU--UGCCGa----GCaaGCuuUu -5'
32149 3' -48.3 NC_007016.1 + 50380 0.67 0.995091
Target:  5'- -uAGGCGGAGACGGUg----CGAGAu -3'
miRNA:   3'- uuUCUGCCUUUGCCGagcaaGCUUUu -5'
32149 3' -48.3 NC_007016.1 + 117700 0.67 0.993306
Target:  5'- --cGGCGGGAACGGgaUCGUgacCGGGAu -3'
miRNA:   3'- uuuCUGCCUUUGCCg-AGCAa--GCUUUu -5'
32149 3' -48.3 NC_007016.1 + 115159 0.67 0.993306
Target:  5'- -cAGACGG-GGCGGCugagcUCGgUCGAGAAc -3'
miRNA:   3'- uuUCUGCCuUUGCCG-----AGCaAGCUUUU- -5'
32149 3' -48.3 NC_007016.1 + 68034 0.68 0.991035
Target:  5'- aAAGGAUGGAAACGGUagcacagUCGGGAAa -3'
miRNA:   3'- -UUUCUGCCUUUGCCGagca---AGCUUUU- -5'
32149 3' -48.3 NC_007016.1 + 115569 0.69 0.98269
Target:  5'- gAAAG-CGGAAACGGCUUccgCGGAGu -3'
miRNA:   3'- -UUUCuGCCUUUGCCGAGcaaGCUUUu -5'
32149 3' -48.3 NC_007016.1 + 9204 0.69 0.982478
Target:  5'- uAGGGCGGAGccaauacACGGCcUGUUUGAGAc -3'
miRNA:   3'- uUUCUGCCUU-------UGCCGaGCAAGCUUUu -5'
32149 3' -48.3 NC_007016.1 + 94787 0.69 0.97544
Target:  5'- -uAGACGGggGCGGCgagaCGUuuUUGGAc- -3'
miRNA:   3'- uuUCUGCCuuUGCCGa---GCA--AGCUUuu -5'
32149 3' -48.3 NC_007016.1 + 108466 0.71 0.945757
Target:  5'- --cGGCGGGGAuuuuuCGGgUCGUUCGGAGGg -3'
miRNA:   3'- uuuCUGCCUUU-----GCCgAGCAAGCUUUU- -5'
32149 3' -48.3 NC_007016.1 + 91636 0.72 0.930259
Target:  5'- --cGACGGAGGgGGaCUCGUcUCGGGAGa -3'
miRNA:   3'- uuuCUGCCUUUgCC-GAGCA-AGCUUUU- -5'
32149 3' -48.3 NC_007016.1 + 111224 0.78 0.660632
Target:  5'- uAGAGAUGGAGAUGGC-CGUUUGAGc- -3'
miRNA:   3'- -UUUCUGCCUUUGCCGaGCAAGCUUuu -5'
32149 3' -48.3 NC_007016.1 + 19800 1.04 0.024175
Target:  5'- cAAAGACGGAAACGGCUCGUUCGAAAAu -3'
miRNA:   3'- -UUUCUGCCUUUGCCGAGCAAGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.