miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32158 3' -54 NC_007016.1 + 10651 0.66 0.953767
Target:  5'- gUGAuaauCGCGaUUGG-CGCGGcGGUugGCGa -3'
miRNA:   3'- -ACUu---GUGC-GACCaGUGCC-UCAugCGC- -5'
32158 3' -54 NC_007016.1 + 70807 0.66 0.949623
Target:  5'- gGAACGCGUUGGUUu--GcGUugGCGa -3'
miRNA:   3'- aCUUGUGCGACCAGugcCuCAugCGC- -5'
32158 3' -54 NC_007016.1 + 17018 0.66 0.945239
Target:  5'- --cACACGCUGuccccGUCGCGGuGUaaaacgGCGCa -3'
miRNA:   3'- acuUGUGCGAC-----CAGUGCCuCA------UGCGc -5'
32158 3' -54 NC_007016.1 + 118852 0.66 0.940612
Target:  5'- gGggUAuCGCggcgGG-CGCGGGGgGCGCGc -3'
miRNA:   3'- aCuuGU-GCGa---CCaGUGCCUCaUGCGC- -5'
32158 3' -54 NC_007016.1 + 19260 0.66 0.940612
Target:  5'- cGAGCGCGUcaGGUaacucucguaggCACGGAGccCGCGa -3'
miRNA:   3'- aCUUGUGCGa-CCA------------GUGCCUCauGCGC- -5'
32158 3' -54 NC_007016.1 + 42942 0.67 0.930621
Target:  5'- uUGGAU-CGCUGGUgGCGGAacacacggGCGUGg -3'
miRNA:   3'- -ACUUGuGCGACCAgUGCCUca------UGCGC- -5'
32158 3' -54 NC_007016.1 + 26549 0.67 0.925254
Target:  5'- aUGGGCACG--GGuUUGCGGGGUGCGUu -3'
miRNA:   3'- -ACUUGUGCgaCC-AGUGCCUCAUGCGc -5'
32158 3' -54 NC_007016.1 + 38398 0.67 0.925254
Target:  5'- cGAACgguGCGCc-GUUACGGAGgcgACGUGg -3'
miRNA:   3'- aCUUG---UGCGacCAGUGCCUCa--UGCGC- -5'
32158 3' -54 NC_007016.1 + 113316 0.67 0.91964
Target:  5'- gGGGCACGCcGGcagaCACGGAGacCGCu -3'
miRNA:   3'- aCUUGUGCGaCCa---GUGCCUCauGCGc -5'
32158 3' -54 NC_007016.1 + 18736 0.67 0.913179
Target:  5'- cGcGCGCGCUGGagcugccUgGCGGGGUAacCGUGg -3'
miRNA:   3'- aCuUGUGCGACC-------AgUGCCUCAU--GCGC- -5'
32158 3' -54 NC_007016.1 + 62521 0.68 0.887897
Target:  5'- aGAugACGggGGUgCGCGGuGUugGCc -3'
miRNA:   3'- aCUugUGCgaCCA-GUGCCuCAugCGc -5'
32158 3' -54 NC_007016.1 + 26087 0.68 0.880833
Target:  5'- cGGcuGCACGCUGGcCuccacCGGGGcccGCGCGg -3'
miRNA:   3'- aCU--UGUGCGACCaGu----GCCUCa--UGCGC- -5'
32158 3' -54 NC_007016.1 + 37821 0.68 0.880833
Target:  5'- gGAAUugGCcGGUgACGGGGUGucaGCu -3'
miRNA:   3'- aCUUGugCGaCCAgUGCCUCAUg--CGc -5'
32158 3' -54 NC_007016.1 + 119600 0.68 0.863726
Target:  5'- aGAACcuguggcccaggcgGCGUUGGggaaGCGGAGgcCGCGg -3'
miRNA:   3'- aCUUG--------------UGCGACCag--UGCCUCauGCGC- -5'
32158 3' -54 NC_007016.1 + 26899 0.69 0.858288
Target:  5'- gGAGgGCGCucaUGGUUugGGuGU-CGCGg -3'
miRNA:   3'- aCUUgUGCG---ACCAGugCCuCAuGCGC- -5'
32158 3' -54 NC_007016.1 + 71898 0.69 0.858288
Target:  5'- -cGACugGgUGGUCGCccuGGGGUugGUGc -3'
miRNA:   3'- acUUGugCgACCAGUG---CCUCAugCGC- -5'
32158 3' -54 NC_007016.1 + 81590 0.69 0.858288
Target:  5'- --uGCGCGC-GGUCACGGAcgGUGggUGCGa -3'
miRNA:   3'- acuUGUGCGaCCAGUGCCU--CAU--GCGC- -5'
32158 3' -54 NC_007016.1 + 6505 0.7 0.789405
Target:  5'- aUGuGCACGCUGuGUCACGGcgacACGCc -3'
miRNA:   3'- -ACuUGUGCGAC-CAGUGCCuca-UGCGc -5'
32158 3' -54 NC_007016.1 + 15397 0.75 0.539823
Target:  5'- cGAACGCGCcucGGUCGCGaGgugaccgccugucacGGUGCGCGg -3'
miRNA:   3'- aCUUGUGCGa--CCAGUGC-C---------------UCAUGCGC- -5'
32158 3' -54 NC_007016.1 + 83343 0.75 0.525726
Target:  5'- gGAAUGCGCcgUGGUCGCGGuGUaaacucgaacaaACGCGg -3'
miRNA:   3'- aCUUGUGCG--ACCAGUGCCuCA------------UGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.