miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32158 5' -60.5 NC_007016.1 + 1034 0.66 0.695354
Target:  5'- -cCGGGGGCGgCgGCCGCgGGCcCGGg -3'
miRNA:   3'- guGCCCUUGCgGaCGGUGgUCGcGCU- -5'
32158 5' -60.5 NC_007016.1 + 90310 0.66 0.695354
Target:  5'- aGCGGGugcagcGugGCC-GCCACCAGgG-GAu -3'
miRNA:   3'- gUGCCC------UugCGGaCGGUGGUCgCgCU- -5'
32158 5' -60.5 NC_007016.1 + 15411 0.66 0.695354
Target:  5'- --gGuGGGGCGCCggcGCCACCAuGUGCc- -3'
miRNA:   3'- gugC-CCUUGCGGa--CGGUGGU-CGCGcu -5'
32158 5' -60.5 NC_007016.1 + 59139 0.66 0.692385
Target:  5'- -uCGGGGgcGCGCCUGacgauuggcaccaaCC-CCAGgGCGAc -3'
miRNA:   3'- guGCCCU--UGCGGAC--------------GGuGGUCgCGCU- -5'
32158 5' -60.5 NC_007016.1 + 78442 0.66 0.664499
Target:  5'- gGCGGugguugcGGACGCCUcgGUgGCCGGgGCGGu -3'
miRNA:   3'- gUGCC-------CUUGCGGA--CGgUGGUCgCGCU- -5'
32158 5' -60.5 NC_007016.1 + 10788 0.66 0.655485
Target:  5'- uCGCGuGuGcAGCGCCUcgGCCACCGGCGa-- -3'
miRNA:   3'- -GUGC-C-C-UUGCGGA--CGGUGGUCGCgcu -5'
32158 5' -60.5 NC_007016.1 + 20436 0.66 0.654482
Target:  5'- gCGCGGGAcccguGCGCgUcccaaauuuuuacGCCG-CGGCGCGAc -3'
miRNA:   3'- -GUGCCCU-----UGCGgA-------------CGGUgGUCGCGCU- -5'
32158 5' -60.5 NC_007016.1 + 107259 0.66 0.654482
Target:  5'- gCACGGG-ACGgUUGgCGCCAGUucucgcaGCGAg -3'
miRNA:   3'- -GUGCCCuUGCgGACgGUGGUCG-------CGCU- -5'
32158 5' -60.5 NC_007016.1 + 115878 0.66 0.645452
Target:  5'- gACGGGu-CGUCgcacGCCGCCAGgGUGc -3'
miRNA:   3'- gUGCCCuuGCGGa---CGGUGGUCgCGCu -5'
32158 5' -60.5 NC_007016.1 + 119074 0.67 0.63541
Target:  5'- gGCGGGGugGUCUGuguggcucaCCGCCuguuGCGUGu -3'
miRNA:   3'- gUGCCCUugCGGAC---------GGUGGu---CGCGCu -5'
32158 5' -60.5 NC_007016.1 + 96082 0.67 0.625365
Target:  5'- cCAUGGGuucGCGCCaGCCACaaauaGGCGaGAg -3'
miRNA:   3'- -GUGCCCu--UGCGGaCGGUGg----UCGCgCU- -5'
32158 5' -60.5 NC_007016.1 + 22750 0.67 0.621348
Target:  5'- gCACGGGuuucgguaaugacGCGCCUggacggcgGCCACCuGGCgGCGGg -3'
miRNA:   3'- -GUGCCCu------------UGCGGA--------CGGUGG-UCG-CGCU- -5'
32158 5' -60.5 NC_007016.1 + 124939 0.67 0.605297
Target:  5'- cCACGuGAACgGCCUguucgGCCgACCAGCGCu- -3'
miRNA:   3'- -GUGCcCUUG-CGGA-----CGG-UGGUCGCGcu -5'
32158 5' -60.5 NC_007016.1 + 91099 0.67 0.605297
Target:  5'- gACGGGGGC-CCUGCC-CUGGcCGCuGAu -3'
miRNA:   3'- gUGCCCUUGcGGACGGuGGUC-GCG-CU- -5'
32158 5' -60.5 NC_007016.1 + 22503 0.67 0.605297
Target:  5'- aCGCGGcGGCGCCgguucagggGUCACCAGUGgGu -3'
miRNA:   3'- -GUGCCcUUGCGGa--------CGGUGGUCGCgCu -5'
32158 5' -60.5 NC_007016.1 + 35726 0.67 0.599289
Target:  5'- aCACGGGguccuccauugacauGuuauucACGCCUacGUCGCUGGCGCGAc -3'
miRNA:   3'- -GUGCCC---------------U------UGCGGA--CGGUGGUCGCGCU- -5'
32158 5' -60.5 NC_007016.1 + 63152 0.67 0.588298
Target:  5'- aCugGGGAACaugcgauaugcggGCCggggGCCgcggauguugaaccgGCCAGCGUGGc -3'
miRNA:   3'- -GugCCCUUG-------------CGGa---CGG---------------UGGUCGCGCU- -5'
32158 5' -60.5 NC_007016.1 + 130158 0.67 0.585306
Target:  5'- -cCGGGAGCGCCccgguccgGCCGagcCCGGCGgCGc -3'
miRNA:   3'- guGCCCUUGCGGa-------CGGU---GGUCGC-GCu -5'
32158 5' -60.5 NC_007016.1 + 14615 0.67 0.585306
Target:  5'- gUugGGGGAggcaGCCgcGCCGCUuggcGGCGCGGc -3'
miRNA:   3'- -GugCCCUUg---CGGa-CGGUGG----UCGCGCU- -5'
32158 5' -60.5 NC_007016.1 + 37883 0.68 0.565445
Target:  5'- gGCGGGAcgGCGCCUaCCGagagcguuaGGCGCGGc -3'
miRNA:   3'- gUGCCCU--UGCGGAcGGUgg-------UCGCGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.