miRNA display CGI


Results 1 - 20 of 42 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32160 3' -59 NC_007016.1 + 22176 0.66 0.762762
Target:  5'- aAGGGCcCCGCGCGUCUgggGGCGCGUUg- -3'
miRNA:   3'- -UCUCGcGGCGCGUGGG---CUGCGUAAgu -5'
32160 3' -59 NC_007016.1 + 92559 0.66 0.753275
Target:  5'- cGGAGC-CCGCGCACCgGccCGCuc-CAa -3'
miRNA:   3'- -UCUCGcGGCGCGUGGgCu-GCGuaaGU- -5'
32160 3' -59 NC_007016.1 + 26713 0.66 0.743684
Target:  5'- cGAGCaCCGCcucaaaagcgGaCACCCGGCGUGUUUg -3'
miRNA:   3'- uCUCGcGGCG----------C-GUGGGCUGCGUAAGu -5'
32160 3' -59 NC_007016.1 + 47716 0.66 0.743684
Target:  5'- cGAGUuuacaCCGCG-ACCaCGGCGCAUUCc -3'
miRNA:   3'- uCUCGc----GGCGCgUGG-GCUGCGUAAGu -5'
32160 3' -59 NC_007016.1 + 12204 0.66 0.743684
Target:  5'- cGGcGCGCCcccCGCGCCCGcCGCGa--- -3'
miRNA:   3'- -UCuCGCGGc--GCGUGGGCuGCGUaagu -5'
32160 3' -59 NC_007016.1 + 22955 0.66 0.742719
Target:  5'- cGAGgGCCGCGCugguugGCagauaauaugaaaCCGGCGCGUcCAu -3'
miRNA:   3'- uCUCgCGGCGCG------UG-------------GGCUGCGUAaGU- -5'
32160 3' -59 NC_007016.1 + 68303 0.66 0.740787
Target:  5'- cGGGGCGCCGCaacaGUAaaccccccauuCCCGggaccgcccgcgauGCGCGUUCGc -3'
miRNA:   3'- -UCUCGCGGCG----CGU-----------GGGC--------------UGCGUAAGU- -5'
32160 3' -59 NC_007016.1 + 130254 0.66 0.724221
Target:  5'- cGGGCgGCCGC-CGCCCGGCaugGCggUCc -3'
miRNA:   3'- uCUCG-CGGCGcGUGGGCUG---CGuaAGu -5'
32160 3' -59 NC_007016.1 + 87947 0.66 0.724221
Target:  5'- --uGUGCCGCGCGCUCGuuGC--UCGa -3'
miRNA:   3'- ucuCGCGGCGCGUGGGCugCGuaAGU- -5'
32160 3' -59 NC_007016.1 + 112061 0.66 0.724221
Target:  5'- cGGGCGCCGCGCAauagcuaUGAUGUAa--- -3'
miRNA:   3'- uCUCGCGGCGCGUgg-----GCUGCGUaagu -5'
32160 3' -59 NC_007016.1 + 123201 0.66 0.714368
Target:  5'- cGGGGCGCaGaCGC-CCCGugGCGg--- -3'
miRNA:   3'- -UCUCGCGgC-GCGuGGGCugCGUaagu -5'
32160 3' -59 NC_007016.1 + 114313 0.66 0.714368
Target:  5'- uGGGGCGCCuuccgaGCGCGCgCCGcCGUucUCGc -3'
miRNA:   3'- -UCUCGCGG------CGCGUG-GGCuGCGuaAGU- -5'
32160 3' -59 NC_007016.1 + 12438 0.66 0.714368
Target:  5'- -cAGCGuCCGCGUuuuGCCgGACGCAc--- -3'
miRNA:   3'- ucUCGC-GGCGCG---UGGgCUGCGUaagu -5'
32160 3' -59 NC_007016.1 + 15168 0.66 0.714368
Target:  5'- aAGGGCGauCCgGCGCACCCuGGCGgCGUgCGa -3'
miRNA:   3'- -UCUCGC--GG-CGCGUGGG-CUGC-GUAaGU- -5'
32160 3' -59 NC_007016.1 + 22494 0.67 0.704446
Target:  5'- gGGGGCGCCaCGCGgC-GGCGCcgGUUCAg -3'
miRNA:   3'- -UCUCGCGGcGCGUgGgCUGCG--UAAGU- -5'
32160 3' -59 NC_007016.1 + 124599 0.67 0.694464
Target:  5'- gGGGGCGauguaUGgGCACCCG-CGcCAUUCu -3'
miRNA:   3'- -UCUCGCg----GCgCGUGGGCuGC-GUAAGu -5'
32160 3' -59 NC_007016.1 + 111791 0.67 0.68443
Target:  5'- cGGGCuCCGUGCcuacgagaguuACCUGACGCGcUCGa -3'
miRNA:   3'- uCUCGcGGCGCG-----------UGGGCUGCGUaAGU- -5'
32160 3' -59 NC_007016.1 + 96953 0.67 0.664243
Target:  5'- cAGAGCGaUCGCGC-CCUauGGCGCAcUCc -3'
miRNA:   3'- -UCUCGC-GGCGCGuGGG--CUGCGUaAGu -5'
32160 3' -59 NC_007016.1 + 1117 0.67 0.664243
Target:  5'- cGGGgGCCGCGCGggagacccucgcCCCgGGCGCAa--- -3'
miRNA:   3'- uCUCgCGGCGCGU------------GGG-CUGCGUaagu -5'
32160 3' -59 NC_007016.1 + 93383 0.67 0.654107
Target:  5'- --cGUGCCGUGCGCuCCGGCGUc---- -3'
miRNA:   3'- ucuCGCGGCGCGUG-GGCUGCGuaagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.