miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32160 5' -57.5 NC_007016.1 + 26706 0.66 0.834762
Target:  5'- gGUGgCGCuacggGCGGCGCGuacgacGGGAcGGUCa -3'
miRNA:   3'- aCACaGCG-----UGCCGUGCu-----CCCUcUCAG- -5'
32160 5' -57.5 NC_007016.1 + 1014 0.66 0.800236
Target:  5'- cGg--CGCGCGGCGCGGGGcggccGGGGG-Cg -3'
miRNA:   3'- aCacaGCGUGCCGUGCUCC-----CUCUCaG- -5'
32160 5' -57.5 NC_007016.1 + 15431 0.67 0.782026
Target:  5'- aUGUGccCGCAauuuggGGCGCGGGGucaggcGGGGGUCa -3'
miRNA:   3'- -ACACa-GCGUg-----CCGUGCUCC------CUCUCAG- -5'
32160 5' -57.5 NC_007016.1 + 26918 0.67 0.753723
Target:  5'- gGUGUCGCGguuaccgcCGuGCugaGAGGGGGAGa- -3'
miRNA:   3'- aCACAGCGU--------GC-CGug-CUCCCUCUCag -5'
32160 5' -57.5 NC_007016.1 + 83671 0.68 0.734302
Target:  5'- cGUGUCGUGCGGg--GAGGGGGAc-- -3'
miRNA:   3'- aCACAGCGUGCCgugCUCCCUCUcag -5'
32160 5' -57.5 NC_007016.1 + 48289 0.68 0.694469
Target:  5'- --gGUCGUGCGgacGCACGGGGGAGGc-- -3'
miRNA:   3'- acaCAGCGUGC---CGUGCUCCCUCUcag -5'
32160 5' -57.5 NC_007016.1 + 25782 0.69 0.652776
Target:  5'- aGUGguuucguUCGCACGGCG-GAuGGGAGGGa- -3'
miRNA:   3'- aCAC-------AGCGUGCCGUgCU-CCCUCUCag -5'
32160 5' -57.5 NC_007016.1 + 112142 0.7 0.602627
Target:  5'- uUGUGUgGCGagGGUACggGAGGGGGuGUCu -3'
miRNA:   3'- -ACACAgCGUg-CCGUG--CUCCCUCuCAG- -5'
32160 5' -57.5 NC_007016.1 + 82716 0.71 0.531087
Target:  5'- cGUGccuggcccCGCACgagauaaggcaggGGCACGAGGGGGAGg- -3'
miRNA:   3'- aCACa-------GCGUG-------------CCGUGCUCCCUCUCag -5'
32160 5' -57.5 NC_007016.1 + 95000 0.73 0.402073
Target:  5'- --cGUCGCGCaGGCugGAcGGGcauGAGUCa -3'
miRNA:   3'- acaCAGCGUG-CCGugCU-CCCu--CUCAG- -5'
32160 5' -57.5 NC_007016.1 + 45945 1.09 0.001706
Target:  5'- uUGUGUCGCACGGCACGAGGGAGAGUCu -3'
miRNA:   3'- -ACACAGCGUGCCGUGCUCCCUCUCAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.