miRNA display CGI


Results 1 - 17 of 17 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32166 3' -58 NC_007016.1 + 114189 0.66 0.759803
Target:  5'- uCAGGCAGGCcaccGGAucGgCCGUGG-GAAAAu -3'
miRNA:   3'- -GUCCGUCCG----CUU--CgGGCACCgCUUUU- -5'
32166 3' -58 NC_007016.1 + 129852 0.66 0.759803
Target:  5'- cCAGGCGagggccccuagcGGCGgcGCCC--GGCGggGg -3'
miRNA:   3'- -GUCCGU------------CCGCuuCGGGcaCCGCuuUu -5'
32166 3' -58 NC_007016.1 + 130253 0.66 0.750078
Target:  5'- cCGGGCGGcCGccGCCCGgcaUGGCGGu-- -3'
miRNA:   3'- -GUCCGUCcGCuuCGGGC---ACCGCUuuu -5'
32166 3' -58 NC_007016.1 + 20923 0.66 0.730319
Target:  5'- uCAGGCcacaAGGCGcGGCCCGgcuauuaGCGAGu- -3'
miRNA:   3'- -GUCCG----UCCGCuUCGGGCac-----CGCUUuu -5'
32166 3' -58 NC_007016.1 + 6973 0.67 0.710209
Target:  5'- -uGGCAGGCG----CCGUGGCGGu-- -3'
miRNA:   3'- guCCGUCCGCuucgGGCACCGCUuuu -5'
32166 3' -58 NC_007016.1 + 28902 0.67 0.689827
Target:  5'- gAGGcCAGGuUGAGGCgCCGguggGGCGAu-- -3'
miRNA:   3'- gUCC-GUCC-GCUUCG-GGCa---CCGCUuuu -5'
32166 3' -58 NC_007016.1 + 67949 0.67 0.689827
Target:  5'- -cGGCAGGUGGAagcGUCCGcgGGCGuuGAc -3'
miRNA:   3'- guCCGUCCGCUU---CGGGCa-CCGCuuUU- -5'
32166 3' -58 NC_007016.1 + 124798 0.68 0.627785
Target:  5'- gAGGcCAGGCGGaauaggccccAGUCUGUcGGCGAGGGu -3'
miRNA:   3'- gUCC-GUCCGCU----------UCGGGCA-CCGCUUUU- -5'
32166 3' -58 NC_007016.1 + 89292 0.68 0.607041
Target:  5'- -uGGCAGGCGuu-CCCGUgaGGCGGGc- -3'
miRNA:   3'- guCCGUCCGCuucGGGCA--CCGCUUuu -5'
32166 3' -58 NC_007016.1 + 82519 0.69 0.565841
Target:  5'- -cGGCAGGCGAaugagGGCCCacgGUuGCGAAGu -3'
miRNA:   3'- guCCGUCCGCU-----UCGGG---CAcCGCUUUu -5'
32166 3' -58 NC_007016.1 + 1037 0.7 0.535417
Target:  5'- gGGGC-GGCGGccgcgGGCCCGggccggccgGGCGGAGGg -3'
miRNA:   3'- gUCCGuCCGCU-----UCGGGCa--------CCGCUUUU- -5'
32166 3' -58 NC_007016.1 + 130338 0.7 0.505587
Target:  5'- gAGGgGGGCuGggGCCCGgGGCGc--- -3'
miRNA:   3'- gUCCgUCCG-CuuCGGGCaCCGCuuuu -5'
32166 3' -58 NC_007016.1 + 122775 0.7 0.495801
Target:  5'- gAGGcCAGGUGgcGCCCGUccGGUGAc-- -3'
miRNA:   3'- gUCC-GUCCGCuuCGGGCA--CCGCUuuu -5'
32166 3' -58 NC_007016.1 + 918 0.71 0.46698
Target:  5'- gGGGCGcucccgggagucGGCGggGCCCGgcgGaGCGGGAc -3'
miRNA:   3'- gUCCGU------------CCGCuuCGGGCa--C-CGCUUUu -5'
32166 3' -58 NC_007016.1 + 22487 0.72 0.429951
Target:  5'- cCAGGCAGGgGgcGCCaCGcGGCGGc-- -3'
miRNA:   3'- -GUCCGUCCgCuuCGG-GCaCCGCUuuu -5'
32166 3' -58 NC_007016.1 + 117751 0.73 0.361383
Target:  5'- gAGGCAGGCGGgaagAGCCUgcagacgucugGUGGCGGc-- -3'
miRNA:   3'- gUCCGUCCGCU----UCGGG-----------CACCGCUuuu -5'
32166 3' -58 NC_007016.1 + 62419 1.06 0.002102
Target:  5'- cCAGGCAGGCGAAGCCCGUGGCGAAAAg -3'
miRNA:   3'- -GUCCGUCCGCUUCGGGCACCGCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.