miRNA: 3'- acauaaGUCAAUGGGACGGGUGUAGc -5'
miRNA: 3'- -ACAU---AAGUCAA-----UGGGACgGGUGUAgc -5'
miRNA: 3'- acauaaGUCaAUGGGACgGGUGUAGc -5'
miRNA: 3'- acauaaGUCaaUGGGACGGGugUaGC- -5'
miRNA: 3'- -ACAUAAGUCAAUGGGACGGGUGUAGC- -5'
Results 1 - 5 of 5 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 32175 | 5' | -49.7 | NC_007016.1 | + | 63630 | 0.66 | 0.994042 |
|
Target: 5'- -----aCGGUUGCUUUGCUCAUAUCc -3' miRNA: 3'- acauaaGUCAAUGGGACGGGUGUAGc -5' |
|||||||
| 32175 | 5' | -49.7 | NC_007016.1 | + | 127432 | 0.67 | 0.992011 |
|
Target: 5'- uUGUAgguUUCAGUUgagucACCCUG-CCACGUa- -3' miRNA: 3'- -ACAU---AAGUCAA-----UGGGACgGGUGUAgc -5' |
|||||||
| 32175 | 5' | -49.7 | NC_007016.1 | + | 73094 | 0.68 | 0.977963 |
|
Target: 5'- -----gCGGgUACCCUGgCCGCGUCa -3' miRNA: 3'- acauaaGUCaAUGGGACgGGUGUAGc -5' |
|||||||
| 32175 | 5' | -49.7 | NC_007016.1 | + | 91100 | 0.69 | 0.972583 |
|
Target: 5'- -----aCGGggGCCCUGCCCugGcCGc -3' miRNA: 3'- acauaaGUCaaUGGGACGGGugUaGC- -5' |
|||||||
| 32175 | 5' | -49.7 | NC_007016.1 | + | 78533 | 1.1 | 0.008753 |
|
Target: 5'- gUGUAUUCAGUUACCCUGCCCACAUCGu -3' miRNA: 3'- -ACAUAAGUCAAUGGGACGGGUGUAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home