Results 1 - 13 of 13 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32176 | 5' | -51 | NC_007016.1 | + | 24791 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 25015 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24965 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24641 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24691 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24741 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24891 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 24841 | 0.66 | 0.991099 |
Target: 5'- cGGUCUCccc-GUUCCccGAggGUCCCGGu -3' miRNA: 3'- -UCGGAGacuaCAAGG--UUaaCAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 7251 | 0.66 | 0.989812 |
Target: 5'- uGCCguggCUGGUG-UCCGAaac-CCCGGg -3' miRNA: 3'- uCGGa---GACUACaAGGUUaacaGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 68122 | 0.66 | 0.986807 |
Target: 5'- cGGCCacUCccagGAUGUUgCCGAU--UCCCGGu -3' miRNA: 3'- -UCGG--AGa---CUACAA-GGUUAacAGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 71007 | 0.69 | 0.948619 |
Target: 5'- cGCCUCUGGUGgucucgUCCAucgacacGUCCacgCGGa -3' miRNA: 3'- uCGGAGACUACa-----AGGUuaa----CAGG---GCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 125054 | 0.73 | 0.810216 |
Target: 5'- cGGCCcuUCUGAUGgcaUCCAAcgGgCCCGGu -3' miRNA: 3'- -UCGG--AGACUACa--AGGUUaaCaGGGCC- -5' |
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32176 | 5' | -51 | NC_007016.1 | + | 79342 | 1.12 | 0.004596 |
Target: 5'- gAGCCUCUGAUGUUCCAAUUGUCCCGGg -3' miRNA: 3'- -UCGGAGACUACAAGGUUAACAGGGCC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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