Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32178 | 3' | -53.9 | NC_007016.1 | + | 31402 | 0.66 | 0.941397 |
Target: 5'- -cAUCGGGgGGCugucaaACACGUCGUcaaacgaugGAGUCg -3' miRNA: 3'- ucUAGCCCgUCG------UGUGCGGUA---------UUCAG- -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 114545 | 0.66 | 0.920191 |
Target: 5'- aAGGg-GGGCAGUucguugagACGCGUCAcGAGUCc -3' miRNA: 3'- -UCUagCCCGUCG--------UGUGCGGUaUUCAG- -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 108903 | 0.66 | 0.914249 |
Target: 5'- --uUCGGGCAGCAgggacucaaACGCCAaUAAaucGUCa -3' miRNA: 3'- ucuAGCCCGUCGUg--------UGCGGU-AUU---CAG- -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 128900 | 0.67 | 0.908053 |
Target: 5'- ----gGGGCAGuUACACGCCAUGu--- -3' miRNA: 3'- ucuagCCCGUC-GUGUGCGGUAUucag -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 16660 | 0.67 | 0.901603 |
Target: 5'- cGAaCGGGCGGCACACGgUcc-GGUUc -3' miRNA: 3'- uCUaGCCCGUCGUGUGCgGuauUCAG- -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 39106 | 0.7 | 0.748512 |
Target: 5'- -cAUCGGGUuGCACAUGCCAc--GUCc -3' miRNA: 3'- ucUAGCCCGuCGUGUGCGGUauuCAG- -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 122715 | 0.71 | 0.718056 |
Target: 5'- gAGuUCGGGCGGCACGuacgcccacUGCCAgGGGUg -3' miRNA: 3'- -UCuAGCCCGUCGUGU---------GCGGUaUUCAg -5' |
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32178 | 3' | -53.9 | NC_007016.1 | + | 84098 | 0.9 | 0.057945 |
Target: 5'- cAGAU-GGcGCAGCACACGCCAUAAGUCu -3' miRNA: 3'- -UCUAgCC-CGUCGUGUGCGGUAUUCAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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