miRNA display CGI


Results 1 - 20 of 32 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32198 5' -65.3 NC_007016.1 + 846 0.66 0.461759
Target:  5'- ----cGCGCGCcGCGGCuuGUGGGGCc- -3'
miRNA:   3'- cggucCGCGCGcCGCCG--UACCCCGag -5'
32198 5' -65.3 NC_007016.1 + 686 0.66 0.461759
Target:  5'- cGCCGGGCaaGCGGCccagaucugcccGGCA-GGucGCUCg -3'
miRNA:   3'- -CGGUCCGcgCGCCG------------CCGUaCCc-CGAG- -5'
32198 5' -65.3 NC_007016.1 + 15434 0.66 0.45292
Target:  5'- uGCCcgcaauuugGGGCGCGgGGUcaGGCG-GGGGUc- -3'
miRNA:   3'- -CGG---------UCCGCGCgCCG--CCGUaCCCCGag -5'
32198 5' -65.3 NC_007016.1 + 1182 0.66 0.444175
Target:  5'- gGCCGGGCGCcUGGgGGCccccgccGGGCg- -3'
miRNA:   3'- -CGGUCCGCGcGCCgCCGuac----CCCGag -5'
32198 5' -65.3 NC_007016.1 + 123436 0.66 0.435525
Target:  5'- cGCCGGGgGCGaucagGGCGGCcacggccGGuGGcCUCg -3'
miRNA:   3'- -CGGUCCgCGCg----CCGCCGua-----CC-CC-GAG- -5'
32198 5' -65.3 NC_007016.1 + 88190 0.66 0.418522
Target:  5'- uCCGGGUGUgGUGGCgcGGCAauugccaaccUGGcGGCUCu -3'
miRNA:   3'- cGGUCCGCG-CGCCG--CCGU----------ACC-CCGAG- -5'
32198 5' -65.3 NC_007016.1 + 22490 0.66 0.418522
Target:  5'- gGCaggGGGCGCcacGCGGCGGCGcc-GGUUCa -3'
miRNA:   3'- -CGg--UCCGCG---CGCCGCCGUaccCCGAG- -5'
32198 5' -65.3 NC_007016.1 + 104079 0.66 0.410174
Target:  5'- gGCCAGG---GUGGCGGCcgucaccUGGGcGCUCa -3'
miRNA:   3'- -CGGUCCgcgCGCCGCCGu------ACCC-CGAG- -5'
32198 5' -65.3 NC_007016.1 + 67259 0.66 0.410174
Target:  5'- uGCCAGGCGUGgGGaccUAUGGauacuuGGCUCg -3'
miRNA:   3'- -CGGUCCGCGCgCCgccGUACC------CCGAG- -5'
32198 5' -65.3 NC_007016.1 + 63132 0.67 0.377052
Target:  5'- gGCCAGGgagaaccgguggcCGCGUGaGCGGCAgcuaGGGGa-- -3'
miRNA:   3'- -CGGUCC-------------GCGCGC-CGCCGUa---CCCCgag -5'
32198 5' -65.3 NC_007016.1 + 126485 0.67 0.370026
Target:  5'- uGCacuaaGGGC-CGCGGCGGCccagcGaGGGUUCg -3'
miRNA:   3'- -CGg----UCCGcGCGCCGCCGua---C-CCCGAG- -5'
32198 5' -65.3 NC_007016.1 + 1081 0.67 0.362326
Target:  5'- aGCCGGGgGagGcCGGCGGCGccccgcucgGGGGCcCg -3'
miRNA:   3'- -CGGUCCgCg-C-GCCGCCGUa--------CCCCGaG- -5'
32198 5' -65.3 NC_007016.1 + 130069 0.67 0.354737
Target:  5'- cGCCGGGcCGCuuucgguucGCGG-GGCcgGGGGUc- -3'
miRNA:   3'- -CGGUCC-GCG---------CGCCgCCGuaCCCCGag -5'
32198 5' -65.3 NC_007016.1 + 130372 0.68 0.350238
Target:  5'- uGCCGGGCagaucugggccgcuuGCcCGGCGGUccugggGaGGGCUCg -3'
miRNA:   3'- -CGGUCCG---------------CGcGCCGCCGua----C-CCCGAG- -5'
32198 5' -65.3 NC_007016.1 + 39537 0.68 0.347261
Target:  5'- aGCCAGGUGCGCaaGCcGCGUauaGGGCUa -3'
miRNA:   3'- -CGGUCCGCGCGc-CGcCGUAc--CCCGAg -5'
32198 5' -65.3 NC_007016.1 + 119828 0.69 0.304798
Target:  5'- gGCCgGGGgGCGCagucGCGGUagGGGGCg- -3'
miRNA:   3'- -CGG-UCCgCGCGc---CGCCGuaCCCCGag -5'
32198 5' -65.3 NC_007016.1 + 17538 0.69 0.285108
Target:  5'- gGCaGGGCGCgGCGGCGGCcaccaGGGuGuCUCu -3'
miRNA:   3'- -CGgUCCGCG-CGCCGCCGua---CCC-C-GAG- -5'
32198 5' -65.3 NC_007016.1 + 115598 0.69 0.285108
Target:  5'- aGCCGGGCGCGgGGCucgacGGC-UGuGGCa- -3'
miRNA:   3'- -CGGUCCGCGCgCCG-----CCGuACcCCGag -5'
32198 5' -65.3 NC_007016.1 + 121431 0.69 0.284469
Target:  5'- aGUCGGGCGauguugcCGUGGCGGCGUcugcaaaGGCUCa -3'
miRNA:   3'- -CGGUCCGC-------GCGCCGCCGUAcc-----CCGAG- -5'
32198 5' -65.3 NC_007016.1 + 72319 0.69 0.272547
Target:  5'- cGUgGGGCGCucuggacUGGCGGCAaaGGGGCUg -3'
miRNA:   3'- -CGgUCCGCGc------GCCGCCGUa-CCCCGAg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.