miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32206 3' -47.2 NC_007016.1 + 91079 0.66 0.999742
Target:  5'- aCgCUGGAGAGCAcgcugagGACGgGgGCCc -3'
miRNA:   3'- aGgGAUCUUUCGUuaa----UUGCaCgCGG- -5'
32206 3' -47.2 NC_007016.1 + 38957 0.66 0.999671
Target:  5'- cCCCUGacGAcGUAAUUGGCGUaaGaCGCCg -3'
miRNA:   3'- aGGGAUcuUU-CGUUAAUUGCA--C-GCGG- -5'
32206 3' -47.2 NC_007016.1 + 89166 0.66 0.999671
Target:  5'- gUCCCUGGccc-CAA--AACGUGCGUg -3'
miRNA:   3'- -AGGGAUCuuucGUUaaUUGCACGCGg -5'
32206 3' -47.2 NC_007016.1 + 37134 0.66 0.999663
Target:  5'- aUCCUGGcaaaaaaccguacAAGGUAGUUGuUGUGaCGCCa -3'
miRNA:   3'- aGGGAUC-------------UUUCGUUAAUuGCAC-GCGG- -5'
32206 3' -47.2 NC_007016.1 + 13722 0.66 0.999663
Target:  5'- gCCCUcaAGAAcaccgccGGCAGggccGCGUGCGgCu -3'
miRNA:   3'- aGGGA--UCUU-------UCGUUaau-UGCACGCgG- -5'
32206 3' -47.2 NC_007016.1 + 36810 0.66 0.999583
Target:  5'- cCUCUAGAAcGCGA--GGCGUuuCGCCg -3'
miRNA:   3'- aGGGAUCUUuCGUUaaUUGCAc-GCGG- -5'
32206 3' -47.2 NC_007016.1 + 71942 0.66 0.999583
Target:  5'- cCCCUGGGgcuAAG-AAUUAucCGcGCGCCa -3'
miRNA:   3'- aGGGAUCU---UUCgUUAAUu-GCaCGCGG- -5'
32206 3' -47.2 NC_007016.1 + 65168 0.66 0.999475
Target:  5'- -aUCUAGAGauGGCAAUgagcCGUGCcuGCCg -3'
miRNA:   3'- agGGAUCUU--UCGUUAauu-GCACG--CGG- -5'
32206 3' -47.2 NC_007016.1 + 107738 0.66 0.999344
Target:  5'- ----aGGAugGGGCAgaaAUUAACGUGCGCg -3'
miRNA:   3'- agggaUCU--UUCGU---UAAUUGCACGCGg -5'
32206 3' -47.2 NC_007016.1 + 85353 0.67 0.999186
Target:  5'- -aCCUGGAGGaacGCAAcaUGACG-GCGCUg -3'
miRNA:   3'- agGGAUCUUU---CGUUa-AUUGCaCGCGG- -5'
32206 3' -47.2 NC_007016.1 + 18398 0.67 0.998996
Target:  5'- uUCCCaGGuAGAcGguGUUGACG-GCGCUg -3'
miRNA:   3'- -AGGGaUC-UUU-CguUAAUUGCaCGCGG- -5'
32206 3' -47.2 NC_007016.1 + 20417 0.67 0.998769
Target:  5'- gCCCUgcgccgccaAGAAGGCGcggGAccCGUGCGCg -3'
miRNA:   3'- aGGGA---------UCUUUCGUuaaUU--GCACGCGg -5'
32206 3' -47.2 NC_007016.1 + 82758 0.67 0.998666
Target:  5'- aCCC-GGAAGGCGGUccagccuccccCGUGCGUCc -3'
miRNA:   3'- aGGGaUCUUUCGUUAauu--------GCACGCGG- -5'
32206 3' -47.2 NC_007016.1 + 76655 0.67 0.9985
Target:  5'- uUCCCgcGAu-GCucGUUGccguAUGUGCGCCg -3'
miRNA:   3'- -AGGGauCUuuCGu-UAAU----UGCACGCGG- -5'
32206 3' -47.2 NC_007016.1 + 123926 0.67 0.9985
Target:  5'- aUCCUgccccAGCAcGUUGACGaggUGCGCCa -3'
miRNA:   3'- -AGGGaucuuUCGU-UAAUUGC---ACGCGG- -5'
32206 3' -47.2 NC_007016.1 + 66837 0.67 0.9985
Target:  5'- aCCCU-GAGAGUGG--AACGgGCGCUa -3'
miRNA:   3'- aGGGAuCUUUCGUUaaUUGCaCGCGG- -5'
32206 3' -47.2 NC_007016.1 + 76363 0.68 0.998182
Target:  5'- gUCCUUcaGGAAAGCugu--GCG-GUGCCg -3'
miRNA:   3'- -AGGGA--UCUUUCGuuaauUGCaCGCGG- -5'
32206 3' -47.2 NC_007016.1 + 71403 0.68 0.99781
Target:  5'- gCCCU--GAGGUuacu--CGUGCGCCa -3'
miRNA:   3'- aGGGAucUUUCGuuaauuGCACGCGG- -5'
32206 3' -47.2 NC_007016.1 + 22485 0.68 0.99781
Target:  5'- aCCCaggcAGggGGCGccacGCGgcgGCGCCg -3'
miRNA:   3'- aGGGa---UCuuUCGUuaauUGCa--CGCGG- -5'
32206 3' -47.2 NC_007016.1 + 85983 0.68 0.99781
Target:  5'- aUUUCUGcuuAGCAcgUGGCGUGUGUCa -3'
miRNA:   3'- -AGGGAUcuuUCGUuaAUUGCACGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.