miRNA display CGI


Results 1 - 16 of 16 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
32206 5' -50 NC_007016.1 + 107897 0.66 0.9962
Target:  5'- gGGcGCGCACGUUAAuuuCUGC-C-CCAUc -3'
miRNA:   3'- -CCuUGCGUGCAAUU---GACGaGaGGUGc -5'
32206 5' -50 NC_007016.1 + 73448 0.67 0.992997
Target:  5'- uGGAACGCaagcaacgGCGUccuucuuCUGCgugCUUCACGa -3'
miRNA:   3'- -CCUUGCG--------UGCAauu----GACGa--GAGGUGC- -5'
32206 5' -50 NC_007016.1 + 58227 0.67 0.991929
Target:  5'- aGGAACGUAuUGUgaaaaaaAGCUGUUUaCCACGg -3'
miRNA:   3'- -CCUUGCGU-GCAa------UUGACGAGaGGUGC- -5'
32206 5' -50 NC_007016.1 + 22025 0.67 0.990734
Target:  5'- cGGGAgGCACGUgcGCcaggugGCUggCCACGc -3'
miRNA:   3'- -CCUUgCGUGCAauUGa-----CGAgaGGUGC- -5'
32206 5' -50 NC_007016.1 + 67282 0.67 0.989406
Target:  5'- cGGGACGUuacACGUg----GCggCUCCGCGg -3'
miRNA:   3'- -CCUUGCG---UGCAauugaCGa-GAGGUGC- -5'
32206 5' -50 NC_007016.1 + 116359 0.67 0.989265
Target:  5'- aGGAACGCcgaagacaacgcaACGgagGGCU-CUCUCaCACGg -3'
miRNA:   3'- -CCUUGCG-------------UGCaa-UUGAcGAGAG-GUGC- -5'
32206 5' -50 NC_007016.1 + 56031 0.67 0.987932
Target:  5'- cGGAcacACGUACGUUAACguugGCg--CUACGc -3'
miRNA:   3'- -CCU---UGCGUGCAAUUGa---CGagaGGUGC- -5'
32206 5' -50 NC_007016.1 + 93208 0.68 0.979957
Target:  5'- -aAAUGCACGcauugacaauaaUAACUGCggcCUCCACGg -3'
miRNA:   3'- ccUUGCGUGCa-----------AUUGACGa--GAGGUGC- -5'
32206 5' -50 NC_007016.1 + 16055 0.68 0.979031
Target:  5'- cGGGGCgGCugagcucggucgagaACGUUAACUGCUCgaugggCACGa -3'
miRNA:   3'- -CCUUG-CG---------------UGCAAUUGACGAGag----GUGC- -5'
32206 5' -50 NC_007016.1 + 68194 0.69 0.969841
Target:  5'- ---cCGCAUGgcGGCcgGCUCUCCGCc -3'
miRNA:   3'- ccuuGCGUGCaaUUGa-CGAGAGGUGc -5'
32206 5' -50 NC_007016.1 + 70644 0.7 0.955719
Target:  5'- uGGAGCGCGCacgGACgGCUCUgaaagacaggaCCACa -3'
miRNA:   3'- -CCUUGCGUGcaaUUGaCGAGA-----------GGUGc -5'
32206 5' -50 NC_007016.1 + 70323 0.72 0.909289
Target:  5'- ----aGCAgGUUAAC-GCUCUCCACu -3'
miRNA:   3'- ccuugCGUgCAAUUGaCGAGAGGUGc -5'
32206 5' -50 NC_007016.1 + 26823 0.73 0.85079
Target:  5'- uGGuuGCGCAUGUgaucgaGACUGCUCUgCACc -3'
miRNA:   3'- -CCu-UGCGUGCAa-----UUGACGAGAgGUGc -5'
32206 5' -50 NC_007016.1 + 13403 0.77 0.676249
Target:  5'- cGGcGCGCGCGgagacguGCUGCUCgcCCACGa -3'
miRNA:   3'- -CCuUGCGUGCaau----UGACGAGa-GGUGC- -5'
32206 5' -50 NC_007016.1 + 111725 0.81 0.477655
Target:  5'- -cGGCGCACGUUAAUUGCUUUCUAgGg -3'
miRNA:   3'- ccUUGCGUGCAAUUGACGAGAGGUgC- -5'
32206 5' -50 NC_007016.1 + 111608 1.13 0.005855
Target:  5'- gGGAACGCACGUUAACUGCUCUCCACGg -3'
miRNA:   3'- -CCUUGCGUGCAAUUGACGAGAGGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.