Results 1 - 16 of 16 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
32206 | 5' | -50 | NC_007016.1 | + | 13403 | 0.77 | 0.676249 |
Target: 5'- cGGcGCGCGCGgagacguGCUGCUCgcCCACGa -3' miRNA: 3'- -CCuUGCGUGCaau----UGACGAGa-GGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 16055 | 0.68 | 0.979031 |
Target: 5'- cGGGGCgGCugagcucggucgagaACGUUAACUGCUCgaugggCACGa -3' miRNA: 3'- -CCUUG-CG---------------UGCAAUUGACGAGag----GUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 22025 | 0.67 | 0.990734 |
Target: 5'- cGGGAgGCACGUgcGCcaggugGCUggCCACGc -3' miRNA: 3'- -CCUUgCGUGCAauUGa-----CGAgaGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 26823 | 0.73 | 0.85079 |
Target: 5'- uGGuuGCGCAUGUgaucgaGACUGCUCUgCACc -3' miRNA: 3'- -CCu-UGCGUGCAa-----UUGACGAGAgGUGc -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 56031 | 0.67 | 0.987932 |
Target: 5'- cGGAcacACGUACGUUAACguugGCg--CUACGc -3' miRNA: 3'- -CCU---UGCGUGCAAUUGa---CGagaGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 58227 | 0.67 | 0.991929 |
Target: 5'- aGGAACGUAuUGUgaaaaaaAGCUGUUUaCCACGg -3' miRNA: 3'- -CCUUGCGU-GCAa------UUGACGAGaGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 67282 | 0.67 | 0.989406 |
Target: 5'- cGGGACGUuacACGUg----GCggCUCCGCGg -3' miRNA: 3'- -CCUUGCG---UGCAauugaCGa-GAGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 68194 | 0.69 | 0.969841 |
Target: 5'- ---cCGCAUGgcGGCcgGCUCUCCGCc -3' miRNA: 3'- ccuuGCGUGCaaUUGa-CGAGAGGUGc -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 70323 | 0.72 | 0.909289 |
Target: 5'- ----aGCAgGUUAAC-GCUCUCCACu -3' miRNA: 3'- ccuugCGUgCAAUUGaCGAGAGGUGc -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 70644 | 0.7 | 0.955719 |
Target: 5'- uGGAGCGCGCacgGACgGCUCUgaaagacaggaCCACa -3' miRNA: 3'- -CCUUGCGUGcaaUUGaCGAGA-----------GGUGc -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 73448 | 0.67 | 0.992997 |
Target: 5'- uGGAACGCaagcaacgGCGUccuucuuCUGCgugCUUCACGa -3' miRNA: 3'- -CCUUGCG--------UGCAauu----GACGa--GAGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 93208 | 0.68 | 0.979957 |
Target: 5'- -aAAUGCACGcauugacaauaaUAACUGCggcCUCCACGg -3' miRNA: 3'- ccUUGCGUGCa-----------AUUGACGa--GAGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 107897 | 0.66 | 0.9962 |
Target: 5'- gGGcGCGCACGUUAAuuuCUGC-C-CCAUc -3' miRNA: 3'- -CCuUGCGUGCAAUU---GACGaGaGGUGc -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 111608 | 1.13 | 0.005855 |
Target: 5'- gGGAACGCACGUUAACUGCUCUCCACGg -3' miRNA: 3'- -CCUUGCGUGCAAUUGACGAGAGGUGC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 111725 | 0.81 | 0.477655 |
Target: 5'- -cGGCGCACGUUAAUUGCUUUCUAgGg -3' miRNA: 3'- ccUUGCGUGCAAUUGACGAGAGGUgC- -5' |
|||||||
32206 | 5' | -50 | NC_007016.1 | + | 116359 | 0.67 | 0.989265 |
Target: 5'- aGGAACGCcgaagacaacgcaACGgagGGCU-CUCUCaCACGg -3' miRNA: 3'- -CCUUGCG-------------UGCaa-UUGAcGAGAG-GUGC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home